Showing : genomicdatacommons • reset
5
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11
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1.8k
views
Matching TCGA Aliquot ID to UUID or Barcode
TCGAutils TCGAbiolinks GenomicDataCommons
updated 2.9 years ago by 570 • written 2.9 years ago by ★ 1.5k
4
votes
2
replies
538
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GenomicDataCommons request timeouts when cases() %>% ... %>% results_all()
genomicdatacommons tcga gdc rest http
updated 3.3 years ago by 21k • written 3.3 years ago by ▴ 20
4
votes
4
replies
414
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2 questions: why there is nothing for file_ids? How could I generate a manifest file with filtering of Race and Ethnicity?
GenomicDataCommons
9 months ago xiaofeiwang18266 ▴ 40
0
votes
4
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383
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extract TCGA barcodes and sample_type information from uuids
GenomicDataCommons R
updated 9 months ago by ▴ 40 • written 2.3 years ago by ▴ 40
3
votes
2
replies
307
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How to obtain clinical data from TCGA via Bioconductor GenomicDataCommons
TCGA GenomicDataCommons
updated 5 months ago by ★ 2.9k • written 5 months ago by ▴ 10
0
votes
1
reply
229
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Getting number of cases added by date to TCGA project with `GenomicDataCommons`
TCGA GenomicDataCommons
14 months ago Ezgi ▴ 30
6 results • Page 1 of 1
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Answer: RPX PXDataset error by Laurent Gatto 1.5k
- From the URL in the error, it looks like you have the latest (or a recent) `rpx` version. It is generally recommended to add the output o…
Answer: Package name already exists due to previous issue by shepherl 3.1k
This has been resolved. There needed to be a manual intervention by the core team to remove the old issue from the issue tracker database.…
Answer: Package name already exists due to previous issue by James W. MacDonald 59k
You should probably send this question to bioc-devel@r-project.org
Comment: edgeR - how to convert DGELRT and other classes to .csv files by Benjamin • 0
Thank you Aaron. I am wondering if you know how to write the .csv file with both the topTags (statistical analysis) and the original counts…
Answer: error with: .make_splicings <- function(exons, cds, stop_codons=NULL) by James W. MacDonald 59k
That's a very old build, and an old version of the GFF standard. You would be better off getting something more recent. ``` > txdb <- m…
Votes
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
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