Showing : genvisr • reset
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GenVisR - adding on genomic positions to CovGen graph
GenVisR GenCov
18 months ago Amy_ • 0
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10
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error in package GenVisR while installing
GenVisR GenVis
updated 5 months ago by ▴ 30 • written 21 months ago by • 0
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1.1k
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Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install mainDropMut GenVisR
updated 22 months ago by 16k • written 23 months ago by • 0
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1.5k
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How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR maftools
23 months ago e • 0
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1.0k
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Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants waterfall GenVisR
updated 3.5 years ago by ▴ 30 • written 3.5 years ago by ▴ 10
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692
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Adding layer to legend in waterfall plot
GenVisR ggplot2 waterfall
4.5 years ago sheneicechang • 0
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902
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Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.6 years ago sheneicechang • 0
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1
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1.0k
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how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr genvisr waterfall mutation
updated 5.4 years ago by ▴ 30 • written 5.5 years ago by • 0
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817
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Issues with lohSpec
genvisr lohSpec
5.8 years ago dharia.priyadarshani • 0
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1.1k
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Copy Number plot cnSpec - how to order samples
genvisr
5.9 years ago cedric.vmdl • 0
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1.9k
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GenVisR- cnSpec CNV plot
GenVisR
6.3 years ago daijieqiong ▴ 10
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2
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1.2k
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an error in TvTi: package GenVisR
GenVisR
updated 7.2 years ago by ▴ 30 • written 7.2 years ago by ▴ 670
2
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5
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2.7k
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GenVisR Installation error message
genvisR
8.2 years ago • updated 8.1 years ago Deep Adhya ▴ 20
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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k
I am not sure how your comment helps here?
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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