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genvisr
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GenVisR - adding on genomic positions to CovGen graph
GenVisR
GenCov
18 months ago
Amy_
• 0
3
votes
10
replies
2.6k
views
error in package GenVisR while installing
GenVisR
GenVis
updated 4 months ago by
zlskidmore
▴ 30 • written 20 months ago by
abhisikta
• 0
0
votes
1
reply
1.1k
views
Unable to install GenVisR under most recent R / Bioconductor version; waterfall option mainDropMut is not working
Install
mainDropMut
GenVisR
updated 22 months ago by
Hervé Pagès
16k • written 22 months ago by
Michel
• 0
0
votes
0
replies
1.4k
views
How to generate a waterfall plot of mutations and CNAs that don't overlap
GenVisR
maftools
22 months ago
e
• 0
0
votes
1
reply
987
views
Waterfall failing with custom file: Error in `colnames<-`(`*tmp*`, value = c("sample", "gene", "trv_type")) : attempt to set 'colnames' on an obje…
variants
waterfall
GenVisR
updated 3.4 years ago by
zlskidmore
▴ 30 • written 3.4 years ago by
Jeni
▴ 10
0
votes
1
reply
675
views
Adding layer to legend in waterfall plot
GenVisR
ggplot2
waterfall
4.4 years ago
sheneicechang
• 0
0
votes
0
replies
870
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR
mutation frequency
R
cancer
bioconductor
4.5 years ago
sheneicechang
• 0
0
votes
1
reply
1.0k
views
how to save picture and add title to waterfall GenVisR mutation analyse?
GenVisr
genvisr
waterfall
mutation
updated 5.3 years ago by
zlskidmore
▴ 30 • written 5.4 years ago by
ZihaoXing
• 0
0
votes
1
reply
788
views
Issues with lohSpec
genvisr
lohSpec
5.7 years ago
dharia.priyadarshani
• 0
0
votes
2
replies
1.1k
views
Copy Number plot cnSpec - how to order samples
genvisr
5.8 years ago
cedric.vmdl
• 0
0
votes
4
replies
1.8k
views
GenVisR- cnSpec CNV plot
GenVisR
6.2 years ago
daijieqiong
▴ 10
0
votes
2
replies
1.2k
views
an error in TvTi: package GenVisR
GenVisR
updated 7.1 years ago by
zlskidmore
▴ 30 • written 7.1 years ago by
Bogdan
▴ 670
2
votes
5
replies
2.6k
views
GenVisR Installation error message
genvisR
8.1 years ago
Deep Adhya
▴ 20
13 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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Gordon Smyth
50k
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