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Showing :
geometadb
•
reset
1
vote
2
replies
673
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 9 months ago by
malat1_t
▴ 10
5
votes
3
replies
1.9k
views
Cannot download GEOmetadb sqlite file
GEOmetadb
updated 11 weeks ago by
ilayahari
• 0 • written 6.4 years ago by
arnaud.ceol.pro
▴ 10
5
votes
2
replies
647
views
outdated GEOmetadb.sqlite
GEOmetadb
14 months ago • updated 12 weeks ago
Robert Castelo
★ 3.2k
1
vote
1
reply
472
views
Why dbConnect GEOmetadb_demo.sqlite shows some information while dbConnect GEOmetadb.sqlite shows no information
GEOmetadb
GEOmetadb.sqlite
dbConnect
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Lee
▴ 10
7
votes
5
replies
6.0k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.9 years ago by
Sean Davis
21k
0
votes
2
replies
994
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
20 months ago • updated 19 months ago
jfertaj
▴ 30
3
votes
2
replies
1.3k
views
Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
geometadb
GEO
R
bioconductor
updated 5.8 years ago by
Sean Davis
21k • written 5.8 years ago by
gaby8638
▴ 20
0
votes
4
replies
1.5k
views
GEOquery using keywords in R
GEO
geoquery
geometadb
updated 5.9 years ago by
Sean Davis
21k • written 5.9 years ago by
Didi
▴ 10
2
votes
1
reply
1.2k
views
GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs
geometadb
updated 6.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 6.5 years ago by
Bohdan Khomtchouk
▴ 10
0
votes
1
reply
1.1k
views
GEOmetadb urgent question!
R
geometadb
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
vasco.cluny
• 0
3
votes
0
replies
3.8k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
8.9 years ago
Sean Davis
21k
0
votes
1
reply
2.0k
views
Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
updated 10.4 years ago by
Sean Davis
21k • written 10.4 years ago by
rohan bareja
▴ 200
0
votes
0
replies
1.6k
views
Fw: Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
10.4 years ago
rohan bareja
▴ 200
0
votes
4
replies
2.0k
views
Meta data for gene from GEO
GEOquery
GEOmetadb
GEOquery
GEOmetadb
updated 10.4 years ago by
Sean Davis
21k • written 10.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.4k
views
getGEO vs GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
10.9 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1.6k
views
GEOmetadb query to retrieve sample groups
GEOmetadb
GEOmetadb
updated 10.9 years ago by
Sean Davis
21k • written 10.9 years ago by
Thomas Hampton
▴ 750
0
votes
0
replies
1.3k
views
getGEO for very large files
GO
GEOmetadb
GO
GEOmetadb
13.0 years ago
Sean Davis
21k
0
votes
5
replies
2.0k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 13.7 years ago by
Alex Levitchi
▴ 30 • written 13.7 years ago by
Sean Davis
21k
0
votes
1
reply
1.4k
views
dynamic library() calls
GEOmetadb
GEOmetadb
13.8 years ago
Jeremiah H. Savage
▴ 110
0
votes
0
replies
1.3k
views
GEOquery question -- suppressing download for GPL queries?
Annotation
GEOquery
GEOmetadb
Annotation
GEOquery
GEOmetadb
14.1 years ago
Sean Davis
21k
0
votes
2
replies
1.3k
views
GEOmetadb query
aCGH
GO
aCGH
GEOmetadb
aCGH
GO
aCGH
GEOmetadb
updated 14.2 years ago by
Jack Zhu
▴ 170 • written 14.3 years ago by
BorisZybailov@gmail.com
▴ 10
0
votes
1
reply
1.8k
views
GEOmetadb: problem with SQLite database download
GEOmetadb
GEOmetadb
14.4 years ago
Axel Klenk
★ 1.0k
0
votes
13
replies
2.8k
views
GEOmetadb and gse organism type
Cancer
Breast
Organism
GEOmetadb
Cancer
Breast
Organism
GEOmetadb
updated 15.1 years ago by
Sean Davis
21k • written 15.1 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
0
replies
1.9k
views
GEO metadata
Cancer
GEOquery
GEOmetadb
Cancer
GEOquery
GEOmetadb
15.1 years ago
Jack Zhu
▴ 170
0
votes
0
replies
1.5k
views
Solved: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
15.6 years ago
gregory voisin
▴ 430
0
votes
1
reply
1.4k
views
GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
gregory voisin
▴ 430
0
votes
0
replies
1.3k
views
problem with GEOquery
GEOmetadb
GEOmetadb
15.8 years ago
Sean Davis
21k
27 results • Page
1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Robert Castelo
★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq
by
lonn
• 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Robert Castelo
★ 3.2k
Popular Question
to
James W. MacDonald
65k
Popular Question
to
shepherl
3.8k
Popular Question
to
BioinfGuru
▴ 30
Popular Question
to
Gordon Smyth
50k
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