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8.9 years ago
Sean Davis
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Wacek Kusnierczyk
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written 13.7 years ago by
Sean Davis
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written 10.4 years ago by
rohan bareja
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14.4 years ago
Axel Klenk
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10.4 years ago
rohan bareja
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written 10.9 years ago by
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updated 5.9 years ago by
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Didi
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13.8 years ago
Jeremiah H. Savage
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10.9 years ago
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15.8 years ago
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written 6.5 years ago by
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updated 8.2 years ago by
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14 months ago • updated 3 months ago
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updated 7 months ago by
James W. MacDonald
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
SamGG
▴
350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
•
0
Hello James,
Thank you for your answer and precise exemple ! It is disappointing but makes sense.
Best,
Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
•
0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
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