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Showing :
geometadb
•
reset
7
votes
5
replies
6.1k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.9 years ago by
Sean Davis
21k
5
votes
2
replies
654
views
outdated GEOmetadb.sqlite
GEOmetadb
14 months ago • updated 3 months ago
Robert Castelo
★ 3.3k
5
votes
3
replies
1.9k
views
Cannot download GEOmetadb sqlite file
GEOmetadb
updated 11 weeks ago by
ilayahari
• 0 • written 6.5 years ago by
arnaud.ceol.pro
▴ 10
3
votes
0
replies
3.8k
views
Tutorial:
dplyr and the GEOmetadb package for mining NCBI GEO metadata
geometadb
dplyr
Tutorial
8.9 years ago
Sean Davis
21k
3
votes
2
replies
1.3k
views
Unable to connect to 'watson.nci.nih.gov' on port 80 using GEOmetadb R library
geometadb
GEO
R
bioconductor
updated 5.8 years ago by
Sean Davis
21k • written 5.8 years ago by
gaby8638
▴ 20
2
votes
1
reply
1.2k
views
GEOmetadb package is missing "Organism" metadata field in all GSE accession IDs
geometadb
updated 6.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 6.5 years ago by
Bohdan Khomtchouk
▴ 10
1
vote
2
replies
683
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 9 months ago by
malat1_t
▴ 10
1
vote
1
reply
477
views
Why dbConnect GEOmetadb_demo.sqlite shows some information while dbConnect GEOmetadb.sqlite shows no information
GEOmetadb
GEOmetadb.sqlite
dbConnect
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Lee
▴ 10
0
votes
1
reply
1.4k
views
dynamic library() calls
GEOmetadb
GEOmetadb
13.8 years ago
Jeremiah H. Savage
▴ 110
0
votes
5
replies
2.0k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 13.7 years ago by
Alex Levitchi
▴ 30 • written 13.7 years ago by
Sean Davis
21k
0
votes
0
replies
1.3k
views
getGEO for very large files
GO
GEOmetadb
GO
GEOmetadb
13.0 years ago
Sean Davis
21k
0
votes
2
replies
1.6k
views
GEOmetadb query to retrieve sample groups
GEOmetadb
GEOmetadb
updated 10.9 years ago by
Sean Davis
21k • written 10.9 years ago by
Thomas Hampton
▴ 750
0
votes
0
replies
1.4k
views
getGEO vs GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
GEOmetadb
Lung
Homo sapiens
Pseudomonas aeruginosa
10.9 years ago
Jack Zhu
▴ 170
0
votes
4
replies
2.0k
views
Meta data for gene from GEO
GEOquery
GEOmetadb
GEOquery
GEOmetadb
updated 10.4 years ago by
Sean Davis
21k • written 10.4 years ago by
Guest User
★ 13k
0
votes
1
reply
2.0k
views
Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
updated 10.4 years ago by
Sean Davis
21k • written 10.4 years ago by
rohan bareja
▴ 200
0
votes
0
replies
1.6k
views
Fw: Meta data for gene from GEO
Annotation
gpls
GEOquery
GEOmetadb
Annotation
gpls
GEOquery
GEOmetadb
10.4 years ago
rohan bareja
▴ 200
0
votes
1
reply
1.1k
views
GEOmetadb urgent question!
R
geometadb
updated 8.2 years ago by
James W. MacDonald
65k • written 8.2 years ago by
vasco.cluny
• 0
0
votes
4
replies
1.5k
views
GEOquery using keywords in R
GEO
geoquery
geometadb
updated 5.9 years ago by
Sean Davis
21k • written 5.9 years ago by
Didi
▴ 10
0
votes
0
replies
1.9k
views
GEO metadata
Cancer
GEOquery
GEOmetadb
Cancer
GEOquery
GEOmetadb
15.1 years ago
Jack Zhu
▴ 170
0
votes
2
replies
1000
views
getSRAdbFile() does not work
SRAdb
GEOmetadb
20 months ago • updated 19 months ago
jfertaj
▴ 30
0
votes
0
replies
1.3k
views
problem with GEOquery
GEOmetadb
GEOmetadb
15.8 years ago
Sean Davis
21k
0
votes
1
reply
1.4k
views
GEOMETADB: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
gregory voisin
▴ 430
0
votes
0
replies
1.5k
views
Solved: unable to connect to 'meltzerlab.nci.nih.gov' on port 80 and GEOmetadb.sqlite.gz file
GEOmetadb
GEOmetadb
15.6 years ago
gregory voisin
▴ 430
0
votes
13
replies
2.9k
views
GEOmetadb and gse organism type
Cancer
Breast
Organism
GEOmetadb
Cancer
Breast
Organism
GEOmetadb
updated 15.1 years ago by
Sean Davis
21k • written 15.1 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
1
reply
1.8k
views
GEOmetadb: problem with SQLite database download
GEOmetadb
GEOmetadb
14.4 years ago
Axel Klenk
★ 1.0k
0
votes
2
replies
1.3k
views
GEOmetadb query
aCGH
GO
aCGH
GEOmetadb
aCGH
GO
aCGH
GEOmetadb
updated 14.3 years ago by
Jack Zhu
▴ 170 • written 14.3 years ago by
BorisZybailov@gmail.com
▴ 10
0
votes
0
replies
1.3k
views
GEOquery question -- suppressing download for GPL queries?
Annotation
GEOquery
GEOmetadb
Annotation
GEOquery
GEOmetadb
14.2 years ago
Sean Davis
21k
27 results • Page
1 of 1
Recent ...
Replies
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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