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Showing :
geoquery
•
reset
3
votes
23
replies
3.7k
views
GEOquery run into problem with Sys.setenv("VROOM_CONNECTION_SIZE")
GEOquery
VROOM
2.3 years ago
array chip
▴ 420
2
votes
15
replies
9.2k
views
GEOquery: getGEO() doesn\'t work (error \"invalid \'nlines\' argument\")
GEOquery
GEOquery
updated 11.8 years ago by
James W. MacDonald
65k • written 11.8 years ago by
Guest User
★ 13k
5
votes
14
replies
14k
views
How to load GEO series matrix file in R Bioconductor
geoquery
updated 8.7 years ago by
Sean Davis
21k • written 8.7 years ago by
ayanava18
▴ 10
2
votes
13
replies
2.8k
views
SCAN.UPC: exception thrown when loading GEOQuery
scan.upc
geoquery
rcurl
9.2 years ago
lep
▴ 90
5
votes
12
replies
2.5k
views
Using eset while parsing GSE file located in a path
GEO
geoquery
updated 5.6 years ago by
Sean Davis
21k • written 5.6 years ago by
mahm
▴ 20
3
votes
11
replies
3.9k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.2 years ago by
Sean Davis
21k • written 7.0 years ago by
jblack29
• 0
3
votes
11
replies
2.3k
views
Filtering Gene Symbols and Sample Description from GSE files of GEO
gene expression
geoquery
GSE
bioconductor
microarray
updated 5.6 years ago by
Sean Davis
21k • written 5.6 years ago by
mahm
▴ 20
4
votes
8
replies
6.9k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
8.5 years ago
alptaciroglu
▴ 50
0
votes
8
replies
2.9k
views
GEOquery Error
GEOquery
GEOquery
updated 12.2 years ago by
Sean Davis
21k • written 12.2 years ago by
ying chen
▴ 340
1
vote
7
replies
1.6k
views
model.matrix from GDS data
model.matrix
lmFit
eBayes
GEOquery
limma
6.1 years ago
darthratus
• 0
10
votes
7
replies
2.4k
views
SummarizedExperiment object from GEOquery obtained GSE
geoquery
summarizedexperiment
GEO
matrix
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
rbronste
▴ 60
5
votes
7
replies
2.0k
views
GEO series matrix empty
GEOquery
GEO
2.1 years ago
gs.123
▴ 20
2
votes
7
replies
1.4k
views
Not able to reproduce limma results from affy chip with or without CEL file from 2 GSE datasets
limma
GEOquery
affy
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
carine.genet
• 0
6
votes
7
replies
2.1k
views
GEOquery reading error on Windows.
GEOquery
GEO
Gene
updated 2.4 years ago by
James W. MacDonald
65k • written 2.4 years ago by
Caitlin
▴ 50
0
votes
7
replies
2.4k
views
Getting annotation into eset
limma
GEOquery
limma
GEOquery
updated 13.4 years ago by
Sean Davis
21k • written 13.4 years ago by
Timothy Wu
▴ 120
0
votes
7
replies
3.2k
views
Normalizing Expressionset Exprs without Raw CEL files
geoquery
normalization
updated 9.4 years ago by
Stephen Piccolo
▴ 590 • written 9.4 years ago by
PyPer
▴ 20
0
votes
6
replies
2.9k
views
processing Illumina HT12v4.0 expression data from GEO
Normalization
affy
PROcess
GEOquery
frma
Normalization
affy
PROcess
GEOquery
frma
updated 9.7 years ago by
Sean Davis
21k • written 9.7 years ago by
Abhishek Pratap
▴ 190
2
votes
6
replies
9.5k
views
GEOquery: how to extract experimental data? (confused)
PROcess
GEOquery
PROcess
GEOquery
updated 12.6 years ago by
Dai, Hongying,
▴ 60 • written 12.6 years ago by
J.delasHeras@ed.ac.uk
★ 1.9k
0
votes
6
replies
1.9k
views
GEOquery and parsing SOFT files
GEOquery
GEOquery
updated 14.9 years ago by
Wolfgang Huber
★ 13k • written 14.9 years ago by
Wacek Kusnierczyk
▴ 180
0
votes
6
replies
1.7k
views
Puma question
cdf
GEOquery
puma
cdf
GEOquery
puma
13.5 years ago
Manca Marco PATH
▴ 340
3
votes
6
replies
2.8k
views
GEOquery: HTTP error 403
GEOquery
GEO
HTTP error 403
4.9 years ago
andy_shaps
▴ 10
0
votes
6
replies
1.9k
views
GEOquery and GSE error
GEOquery
GEOquery
updated 12.5 years ago by
Sean Davis
21k • written 12.5 years ago by
Voke AO
▴ 760
0
votes
6
replies
1.2k
views
installation error of a bioconductor package in my workspace
GEOquery
GEOquery
updated 11.9 years ago by
carol white
▴ 680 • written 11.9 years ago by
Dan Tenenbaum
★ 8.2k
0
votes
5
replies
1.5k
views
installation error of a bioconductor package in my workspace
GEOquery
GEOquery
12.0 years ago
carol white
▴ 680
0
votes
5
replies
2.0k
views
downloading different kinds of microarray data
Sequencing
Microarray
Genetics
Annotation
gpls
convert
GEOquery
GEOmetadb
Sequencing
gpls
updated 13.6 years ago by
Alex Levitchi
▴ 30 • written 13.6 years ago by
Sean Davis
21k
7
votes
5
replies
6.0k
views
Tutorial:
Accessing Public Genomic Data from Bioconductor
geoquery
geometadb
sradb
Tutorial
written 8.8 years ago by
Sean Davis
21k
2
votes
5
replies
1.4k
views
Error with GEOquery
GEOquery
GEOquery
updated 18.0 years ago by
Peter
▴ 170 • written 18.0 years ago by
Sharon Anbu
▴ 480
3
votes
5
replies
4.8k
views
Tutorial:
Patch for GEOquery package error: getGEO Error in download.file, cannot open destfile
R
GEO
geoquery
geoquery error message
Tutorial
6.2 years ago
martinguerrerog89
▴ 20
3
votes
5
replies
2.5k
views
getGEO function doesn't download the expression data
geoquery
updated 5.7 years ago by
Axel Klenk
▴ 990 • written 5.7 years ago by
fwere
▴ 10
6
votes
5
replies
3.6k
views
Processing two-colour array data from GEO using limma when no raw data are available
limma
geoquery
updated 8.2 years ago by
Gordon Smyth
50k • written 8.2 years ago by
Jason
▴ 20
6
votes
5
replies
1.2k
views
a problem of package ""
GEO
GEOquery
updated 2.8 years ago by
Hervé Pagès
16k • written 2.8 years ago by
sheldon19931016
▴ 20
0
votes
5
replies
3.4k
views
assayData: 0 features
geoquery
updated 3.1 years ago by
H. Z. Amini
▴ 10 • written 8.5 years ago by
Ed Siefker
▴ 230
0
votes
5
replies
1.8k
views
XML package - 500 internal server error
GEOquery
ArrayExpress
GEOquery
ArrayExpress
updated 10.9 years ago by
Sean Davis
21k • written 10.9 years ago by
boczniak767
▴ 720
0
votes
5
replies
2.0k
views
Install a custom CDF file
makecdf
RMA
annotation
biobase
GEOquery
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
Seymoo
• 0
0
votes
5
replies
1.3k
views
GEOquery and Sample Subsets
GEOquery
GEOquery
updated 10.8 years ago by
Sean Davis
21k • written 10.8 years ago by
Thomas Hampton
▴ 750
5
votes
5
replies
1.1k
views
Annotation issue while analyzing processed Affymetrix Human Exon 1.0 ST Arrays from Geoquery
affycoretools
huex10sttranscriptcluster.db
affymetrix
Geoquery
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
svlachavas
▴ 830
1
vote
5
replies
1.0k
views
Can't read in CEL files
GEO
GEOquery
21 months ago
OE
• 0
0
votes
5
replies
1.5k
views
getGEO error
GEOquery
GEOquery
updated 11.2 years ago by
Sean Davis
21k • written 11.2 years ago by
Alyaa Mahmoud
▴ 440
0
votes
4
replies
2.6k
views
GEOquery loading error
hgu133plus2
GEOquery
BiocInstaller
hgu133plus2
GEOquery
BiocInstaller
updated 11.8 years ago by
Dan Tenenbaum
★ 8.2k • written 11.8 years ago by
Guest User
★ 13k
2
votes
4
replies
1.5k
views
GEOquery: Missing featureNames after creating expression set from series matrix file
geoquery
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
knaxerova
▴ 10
3
votes
4
replies
1.3k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.1 years ago by
Sean Davis
21k • written 6.1 years ago by
umahajan
▴ 10
0
votes
4
replies
1.3k
views
Agi4x44PreProcess
convert
GEOquery
Agi4x44PreProcess
convert
GEOquery
Agi4x44PreProcess
updated 14.3 years ago by
Neel Aluru
▴ 460 • written 14.3 years ago by
Francois Pepin
★ 1.3k
0
votes
4
replies
2.0k
views
GEO and Limma
limma
GEOquery
limma
GEOquery
12.5 years ago
Voke AO
▴ 760
1
vote
4
replies
1.9k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress
geoquery
geneexpression
updated 6.0 years ago by
Sean Davis
21k • written 6.0 years ago by
arbet003
▴ 10
0
votes
4
replies
1.4k
views
error reading GSE file
GEOquery
GEOquery
updated 9.2 years ago by
acd13
• 0 • written 12.7 years ago by
Reema Singh
▴ 570
0
votes
4
replies
1.0k
views
stuck in biocLite("GEOquery")
GEOquery
GEOquery
updated 13.1 years ago by
Dan Tenenbaum
★ 8.2k • written 13.1 years ago by
Jack Luo
▴ 440
5
votes
4
replies
3.8k
views
GEOquery Fails to Download Series Matrix File
geoquery
ncbi geo
geo data
7.4 years ago
fongchunchan
▴ 30
0
votes
4
replies
2.0k
views
Meta data for gene from GEO
GEOquery
GEOmetadb
GEOquery
GEOmetadb
updated 10.4 years ago by
Sean Davis
21k • written 10.4 years ago by
Guest User
★ 13k
0
votes
4
replies
4.3k
views
GEOquery
convert
GEOquery
convert
GEOquery
updated 14.0 years ago by
Sean Davis
21k • written 14.0 years ago by
Julie Zhu
★ 4.3k
2
votes
4
replies
1.5k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
8.2 years ago
rfb
• 0
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May be documented by the software you are using? https://github.com/lpantano/DEGreport
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