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germline
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Understanding PureCN and its germline SNPs
PureCN
germline
SNP
updated 4.7 years ago by
kakbrus
• 0 • written 4.8 years ago by
twtoal
▴ 10
2
votes
3
replies
817
views
PureCN can classify indel variants as germline vs. somatic ?
PureCN
indel
somatic
germline
updated 5.7 years ago by
markus.riester
▴ 130 • written 5.7 years ago by
pathkim
• 0
0
votes
2
replies
652
views
CNV in Normal Samples?
PureCN
Germline
Normal
CNV
updated 4.4 years ago by
markus.riester
▴ 130 • written 4.4 years ago by
twtoal
▴ 10
3 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
39k
The number should be roughly 7000 across the iterations. Can you show table(seqnames(gr)) for the original and for one iteration of the b…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you for your help Dr. Michael. One more doubt, my original loci contains 7000 locus on different chromosomes. When i am generating …
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Robert Castelo
★ 3.0k
As James said, a `GAlignmentsList` object is the container for storing properly-paired, but with ambiguous pairing, alignments, and we're i…
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
by
James W. MacDonald
62k
Your first question is something that you will have to answer for yourself. There are any number of reasons that an array manufacturer will…
Comment: Splicing analysis with ASpli package gives an error when I use binGenome functio
by
Sophie
• 0
I was having a similar problem using the hg19 genome from UCSC. I tried many different ways of accessing the gtf and txdb object (i.e. down…
Votes
A: Calculate S/N ratios from apeglm for GSEA
A: Calculate S/N ratios from apeglm for GSEA
Calculate S/N ratios from apeglm for GSEA
Convert SpatialExperiment Object to Seurat Object
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
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