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Comment: Duplicate row.names when building SummarizedExperiment with make_se in DEP by Simran • 0

did you get your answer? I've been using DEP several times but the error only shows up now for some reason?

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by tahir.msajid • 0

Got it. Thank you Rory.

Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData by garbuzov • 0

Thanks! That was it... why did I think they were equivalent?

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

Thank you @gordon-smyth for your patience and time. I see that I need to reread carefully the user guide so I could follow your advice.

Comment: Time-course, comparison of two groups by boczniak767 ▴ 720

> Do you have actually have data or is this is a theoretical exercise? A the moment I don't have data from my principal investigator's exp…

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Filtering low variance genes for WGCNA

Calculation of module membership in WGCNA

Comment: From a ENST to ENSG

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