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Showing :
getGEO
•
reset
2
votes
4
replies
1.5k
views
GEOquery: Shifted data columns in phenotype data
geoquery
getgeo
8.3 years ago
rfb
• 0
2
votes
4
replies
2.8k
views
getGEO function not identifying local file
geoquery
getGEO
8.6 years ago
Prasanth
▴ 20
4
votes
8
replies
6.9k
views
getGEO - cannot Open URL issue
getGEO
R
GEOquery
8.5 years ago
alptaciroglu
▴ 50
3
votes
2
replies
3.1k
views
getGEO error when trying to download a series matrix file
GEOquery
getGEO
6.1 years ago
rubi
▴ 110
3
votes
4
replies
1.3k
views
getGEO Error: Duplicate identifiers for rows
geoquery
getgeo
updated 6.2 years ago by
Sean Davis
21k • written 6.2 years ago by
umahajan
▴ 10
0
votes
2
replies
2.0k
views
Why getGEO returns an expressionset with zero features ?
getgeo
8.1 years ago
xishan78
• 0
3
votes
11
replies
3.9k
views
GEOquery http:// url error
geoquery
error
getgeo
microarray
geo
updated 6.3 years ago by
Sean Davis
21k • written 7.0 years ago by
jblack29
• 0
2
votes
6
replies
1.4k
views
error reading GSE using getGEO()
r
geo
getgeo
5.8 years ago
jaleh.amo
• 0
2
votes
2
replies
1.8k
views
getGEO error
getgeo
geoquery
updated 8.3 years ago by
Gordon Smyth
50k • written 8.3 years ago by
maedakus
▴ 10
2
votes
2
replies
2.1k
views
GEOquery error in downloading SOFT files
geoquery
getgeo
GEO
7.4 years ago
hzc363
▴ 20
2
votes
2
replies
1.6k
views
Problem with GEOquery R package in Windows when trying to download specific GEO processed data
geoquery
affymetrix microarrays
windows8
getGEO
updated 7.0 years ago by
Sean Davis
21k • written 7.0 years ago by
svlachavas
▴ 830
0
votes
2
replies
1.7k
views
Error in GEOquery
geoquery
getgeo
R
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
rk489
• 0
3
votes
1
reply
1.2k
views
getGEO Error: Duplicate identifiers for rows
getGEO
updated 6.4 years ago by
James W. MacDonald
65k • written 6.4 years ago by
cg
▴ 10
2
votes
2
replies
1.2k
views
getGEO from GEOquery doesn't return probesets
geoquery
getgeo
probeset
updated 6.1 years ago by
James W. MacDonald
65k • written 6.1 years ago by
dnedveck
• 0
0
votes
1
reply
3.6k
views
getGEO Failed to connect to ftp.ncbi.nlm.nih.gov port 21: Timed out
getGEO
8.2 years ago
maedakus
▴ 10
0
votes
0
replies
946
views
getGEO is taking too long time for a file that is already locally cached
getgeo
r
8.1 years ago
alptaciroglu
▴ 50
16 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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