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getSeq
•
reset
1
vote
3
replies
1.7k
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Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome
ORFik
getSeq
3.1 years ago
hauken_heyken
▴ 80
0
votes
1
reply
712
views
Error Message in signeR
signeR
getseq
updated 5.0 years ago by
renan.valieris
▴ 10 • written 5.0 years ago by
TRASA
• 0
4
votes
1
reply
1.7k
views
Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome
getSeq
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
rubi
▴ 110
1
vote
2
replies
1.4k
views
Error in BSGenome "getSeq" function
R
bsgenome
getseq
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
pm16057
• 0
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
TimothéeFlutre
▴ 80
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.4 years ago
Dimitris Polychronopoulos
▴ 80
0
votes
2
replies
2.2k
views
BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome
getseq
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
dborgesrmit
• 0
7 results • Page
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Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough? Thank …
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
Answer: How to retrieve gene ontology GO class from gene list?
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