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getseq
•
reset
1
vote
3
replies
1.4k
views
NAs values when importing BED file using import function
rtracklayer
NA
BED
getseq
8.4 years ago
Dimitris Polychronopoulos
▴ 80
1
vote
3
replies
1.7k
views
Does there exists a getSeq like function for ranges that wrap around end to start ?
circulargenome
ORFik
getSeq
3.1 years ago
hauken_heyken
▴ 80
0
votes
2
replies
2.2k
views
BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStrict = !allow.append)
bsgenome
getseq
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
dborgesrmit
• 0
1
vote
2
replies
1.4k
views
Error in BSGenome "getSeq" function
R
bsgenome
getseq
updated 7.3 years ago by
James W. MacDonald
65k • written 7.3 years ago by
pm16057
• 0
4
votes
1
reply
1.7k
views
Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome
getSeq
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
rubi
▴ 110
3
votes
1
reply
5.3k
views
extract subsequence(s) from DNAStringSet with getSeq
dnastringset
getseq
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
TimothéeFlutre
▴ 80
0
votes
1
reply
712
views
Error Message in signeR
signeR
getseq
updated 5.0 years ago by
renan.valieris
▴ 10 • written 5.0 years ago by
TRASA
• 0
7 results • Page
1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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