Bioconductor Ggcyto

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ggcyto

updated 17 months ago by shepherl 3.8k • written 17 months ago by philippe.hauchamps ▴ 10

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542

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FlowCytometry flowCore openCyto ggcyto

17 months ago Dennis.hinkel • 0

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634

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ggcyto

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by alex • 0

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ggcyto

19 months ago alex • 0

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1.4k

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FlowCytometry flowCore ggcyto

updated 19 months ago by SamGG ▴ 350 • written 19 months ago by alex • 0

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512

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ggcyto

2.0 years ago Robert Baer ▴ 70

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866

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CytoML ggcyto cytoml

2.1 years ago FL • 0

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848

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flowCore ggcyto FlowCytometryData

updated 2.6 years ago by Jiang, Mike ★ 1.3k • written 3.0 years ago by Elizabeth • 0

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868

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software error flow cytometry ggcyto flowAI

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by Robert Baer ▴ 70

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1.5k

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ggcyto flowWorkspace flow cytometry flowjo

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by andrej.stoll.de ▴ 10

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945

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ggcyto ggcyto_arrange autoplot

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.0 years ago by alavy ▴ 30

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1.4k

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flowcore ggcyto

updated 6.1 years ago by Jiang, Mike ★ 1.3k • written 6.1 years ago by Andrew Box ▴ 10

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859

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ggcyto autoplot axis

6.2 years ago anders.tondell ▴ 30

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1.6k

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flowCore ggcyto

updated 7.2 years ago by Jiang, Mike ★ 1.3k • written 7.2 years ago by jaera • 0

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1.6k

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ggcyto

updated 7.4 years ago by Jiang, Mike ★ 1.3k • written 7.4 years ago by anders.tondell ▴ 30

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1.6k

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flowcore ggcyto

updated 8.2 years ago by Jiang, Mike ★ 1.3k • written 8.3 years ago by OT • 0

16 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0