Bioconductor Ggcyto

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ggcyto flowWorkspace flow cytometry flowjo

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by andrej.stoll.de ▴ 10

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flowcore ggcyto

updated 6.1 years ago by Jiang, Mike ★ 1.3k • written 6.1 years ago by Andrew Box ▴ 10

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FlowCytometry flowCore ggcyto

updated 19 months ago by SamGG ▴ 350 • written 19 months ago by alex • 0

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flowcore ggcyto

updated 8.2 years ago by Jiang, Mike ★ 1.3k • written 8.3 years ago by OT • 0

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ggcyto

updated 17 months ago by shepherl 3.8k • written 17 months ago by philippe.hauchamps ▴ 10

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software error flow cytometry ggcyto flowAI

updated 3.9 years ago by Kevin Blighe ★ 3.9k • written 3.9 years ago by Robert Baer ▴ 70

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544

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FlowCytometry flowCore openCyto ggcyto

17 months ago Dennis.hinkel • 0

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CytoML ggcyto cytoml

2.1 years ago FL • 0

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849

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flowCore ggcyto FlowCytometryData

updated 2.6 years ago by Jiang, Mike ★ 1.3k • written 3.0 years ago by Elizabeth • 0

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ggcyto

2.0 years ago Robert Baer ▴ 70

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636

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ggcyto

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by alex • 0

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ggcyto

19 months ago alex • 0

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ggcyto

updated 7.4 years ago by Jiang, Mike ★ 1.3k • written 7.4 years ago by anders.tondell ▴ 30

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flowCore ggcyto

updated 7.2 years ago by Jiang, Mike ★ 1.3k • written 7.2 years ago by jaera • 0

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861

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ggcyto autoplot axis

6.2 years ago anders.tondell ▴ 30

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ggcyto ggcyto_arrange autoplot

updated 4.0 years ago by Jake Wagner ▴ 310 • written 4.0 years ago by alavy ▴ 30

16 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0