Bioconductor Ggtools

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SNP HapMap GGtools SNP HapMap GGtools

updated 14.1 years ago by Vincent J. Carey, Jr. 6.7k • written 14.1 years ago by claire pujoll ▴ 30

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GGtools GGtools

updated 14.3 years ago by Vincent J. Carey, Jr. 6.7k • written 14.3 years ago by Paul Geeleher ★ 1.3k

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1.1k

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GGtools GGtools

updated 13.4 years ago by Vincent J. Carey, Jr. 6.7k • written 13.4 years ago by Mao Jianfeng ▴ 290

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1.6k

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GUI GGtools GGBase GUI GGtools GGBase

updated 13.2 years ago by Vincent J. Carey, Jr. 6.7k • written 13.2 years ago by Neel Aluru ▴ 460

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1.5k

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Infrastructure GUI Ruuid GGtools GGBase Infrastructure GUI Ruuid GGtools GGBase

updated 13.1 years ago by Vincent J. Carey, Jr. 6.7k • written 13.1 years ago by Neel Aluru ▴ 460

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861

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SNP GGtools SNP GGtools

updated 13.1 years ago by Vincent J. Carey, Jr. 6.7k • written 13.1 years ago by Richard Pearson ▴ 160

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1.5k

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SNP convert GGtools snpMatrix SNP convert GGtools snpMatrix

updated 12.9 years ago by Vincent J. Carey, Jr. 6.7k • written 12.9 years ago by Mao Jianfeng ▴ 290

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1.5k

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SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools

updated 11.6 years ago by Vincent J. Carey, Jr. 6.7k • written 11.6 years ago by Guest User ★ 13k

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2.3k

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GGtools GGtools

updated 13.2 years ago by Martin Morgan 25k • written 13.2 years ago by Mao Jianfeng ▴ 290

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966

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GGtools GGtools

updated 10.1 years ago by Vincent J. Carey, Jr. 6.7k • written 10.1 years ago by Fabrice Tourre ▴ 970

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835

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SNP GGtools SNP GGtools

updated 15.7 years ago by Vincent J. Carey, Jr. 6.7k • written 15.7 years ago by Nathan Harmston ▴ 100

11 results • Page 1 of 1

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Answer: Why p value inconsistent when using different number of pathway score? by ATpoint ★ 4.0k

Same answer as here: https://support.bioconductor.org/p/9157606/ Adding or removing data (samples, genes, pathways, observations...) chang…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0

Thanks Robert!

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

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Scholar to Robert Castelo ★ 3.2k

Popular Question to James W. MacDonald 65k