Showing : ggtree • reset
0
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86
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ggtree tip label position (depth)
ggtree
14 days ago • updated 13 days ago Roope • 0
1
vote
4
replies
3.4k
views
ggtree functions suddenly stopped working: "Error in offspring.tbl_tree_item(..."
ggtree
updated 9 months ago by • 0 • written 9 months ago by • 0
0
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3
replies
703
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
13 months ago christian.dina • 0
0
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0
replies
418
views
Using a clustree object to draw a "classical" dendogram
ggplot dendogram ggtreeExtra clustree ggtree
13 months ago christian.dina • 0
2
votes
1
reply
567
views
Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
ggtree
updated 13 months ago by 3.8k • written 13 months ago by ▴ 10
0
votes
1
reply
1.3k
views
[ NEED HELP >:( ] ggtree Installation Error
ggtree
updated 19 months ago by 3.8k • written 19 months ago by • 0
2
votes
3
replies
8.5k
views
ggtree install
ggtree rvcheck
updated 2.5 years ago by • 0 • written 2.6 years ago by ▴ 10
0
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0
replies
1000
views
ggtree, ggimage : issue with radial rotation of external image files around circular phylogeny
ggimage ggtree
2.9 years ago moria.robinson • 0
0
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0
replies
733
views
How to place jplace Querries from EPA RAxML on the tree as branches in Teeio/ggtree?
treeio EPA jplace RAxML ggtree
3.1 years ago Vincent • 0
3
votes
3
replies
1.1k
views
How can I use 'geom_taxalink()' with the circular layout in the 'ggtree' package in R?
r ggtree phylogeny
updated 3.8 years ago by ★ 1.2k • written 3.8 years ago by ▴ 10
6
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2
replies
4.1k
views
making tree from NCBI taxonomy data for ggtree
ggtree
updated 4.2 years ago by • 0 • written 8.0 years ago by ▴ 40
0
votes
1
reply
1.4k
views
Highligting specific tips/taxa with asterisk using ggtree
ggtree
updated 4.9 years ago by ★ 1.2k • written 5.2 years ago by • 0
0
votes
1
reply
1.7k
views
How to save changes on a phylogeneitc tree using ggtree and treeio?
ggtree treeio
5.8 years ago jdimopoulos21 • 0
2
votes
2
replies
1.5k
views
Something wrong with my Bioconductor installation? ggtree cannot read any tree
ggtree
updated 6.0 years ago by ▴ 130 • written 6.0 years ago by • 0
0
votes
1
reply
1.5k
views
tip_glom and annotations?
ggtree treeio phyloseq annotation tip_glom
updated 6.2 years ago by ★ 1.2k • written 6.2 years ago by • 0
0
votes
3
replies
3.4k
views
Unable to reroot RAxML tree with ggtree
ggtree raxml reroot tree
6.2 years ago kevin.liam.keegan • 0
0
votes
1
reply
1.9k
views
ggtree: time-scaled tree s
phylogenetic ggtree calibration fossils times-scale
updated 6.6 years ago by ★ 1.2k • written 6.7 years ago by • 0
1
vote
2
replies
1.7k
views
EBImage cannot read .png images from Image.R
ebimage ggtree
updated 6.9 years ago by ▴ 750 • written 6.9 years ago by • 0
2
votes
3
replies
5.2k
views
Error during EBImage installation
ebimage ggtree package installation
updated 6.9 years ago by ▴ 750 • written 6.9 years ago by ▴ 10
0
votes
1
reply
2.0k
views
ggtree facet_plot question using geom_boxplot to plot abundance data corresponding to tree tips
ggtree ggplot2 phyloseq geom_boxplot facet_plot
updated 7.1 years ago by ★ 1.2k • written 7.1 years ago by • 0
2
votes
7
replies
2.3k
views
Visualize lineage tree using ggtree
ggtree lineage
7.7 years ago • updated 7.6 years ago yun YAN ▴ 20
0
votes
1
reply
1.4k
views
Error displayed when trying to annotate tree with boostrap values and Phylopic
ggtree
updated 7.6 years ago by ★ 1.2k • written 7.6 years ago by • 0
2
votes
0
replies
1.2k
views
News: ggtree published in MEE
ggtree News
7.6 years ago Guangchuang Yu ★ 1.2k
0
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1
reply
2.1k
views
Plotting with ggtree fails after midpoint rooting
ggtree
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by • 0
5
votes
3
replies
12k
views
ggtree - trouble displaying longer label names
ggtree
updated 8.6 years ago by ★ 1.2k • written 8.6 years ago by ▴ 150
9
votes
8
replies
6.7k
views
News: new package `ggtree` in devel branch
ggtree phylogenetic News
updated 9.2 years ago by ▴ 10 • written 9.3 years ago by ★ 1.2k
26 results • Page 1 of 1
Recent ...
Replies
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
I'm new here, but its better now?
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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