Showing : glad • reset
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multiple threads on QuasR
Alignment GLAD QuasR Alignment GLAD QuasR
11.0 years ago Michael Stadler ▴ 350
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.2 years ago Michael Lawrence ▴ 620
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1
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1.1k
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Normalized data in expresso and Expression Console differ
Normalization GLAD Normalization GLAD
updated 14.8 years ago by ★ 3.9k • written 14.8 years ago by ▴ 10
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0
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1.1k
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error in plotKEGGGraph
Pathways GLAD KEGGgraph Pathways GLAD KEGGgraph
13.6 years ago Robert M. Flight ▴ 280
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0
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873
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HTqPCR question
Microarray limma GLAD HTqPCR Microarray limma GLAD HTqPCR
13.4 years ago Heidi Dvinge ★ 2.0k
0
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0
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1.1k
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question regarding ChIPPeakAnno use
Annotation annotate GLAD ChIPpeakAnno Annotation annotate GLAD ChIPpeakAnno
11.6 years ago Julie Zhu ★ 4.3k
0
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3
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1.9k
views
Diffbind: Binding Affinity Heatmap
Sequencing GO Clustering GLAD edgeR DESeq DiffBind Sequencing GO Clustering GLAD edgeR
10.7 years ago Rory Stark ★ 5.1k
0
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1
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981
views
Re: Bioconductor digest, Vol 1 #134 - 5 msgs
cdf multtest affy GLAD cdf multtest affy GLAD
updated 21.5 years ago by ★ 2.3k • written 21.5 years ago by ▴ 10
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2
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875
views
Re: Better mailing list archives {was "Searching BioC .."}
GLAD GLAD
20.6 years ago Warnes, Gregory R ▴ 460
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0
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942
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affy, how to define the normalization method that works with my data
Normalization affy GLAD Normalization affy GLAD
19.8 years ago Dipl.-Ing. Johannes Rainer ▴ 430
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1
reply
597
views
questions about limma
Microarray limma GLAD Microarray limma GLAD
updated 19.7 years ago by 65k • written 19.7 years ago by ▴ 10
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0
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606
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GeneExpressionOmnibus (GEO) question
AnnBuilder GLAD AnnBuilder GLAD
19.5 years ago Ilya Venger ▴ 20
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0
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1.3k
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Metrology for Gene Expression -- Postdoc Opportunities at NIST
Microarray PROcess GLAD attract Microarray PROcess GLAD attract
19.4 years ago Marc Salit ▴ 80
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8
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1.5k
views
Gene Selection
GLAD GLAD
updated 19.2 years ago by ▴ 210 • written 19.2 years ago by ▴ 310
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0
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1.1k
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Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
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1
reply
789
views
error message from GLAD
CGH GLAD CGH GLAD
updated 18.7 years ago by ▴ 20 • written 18.7 years ago by ▴ 30
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0
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652
views
Rosetta vs Limma
limma GLAD limma GLAD
18.4 years ago Gordon Smyth 50k
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0
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605
views
geneName in GEOquery package
affy GLAD GEOquery affy GLAD GEOquery
18.3 years ago Sean Davis 21k
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1.0k
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Analysing categorical CGH data
Clustering Cancer CGH GLAD made4 Clustering Cancer CGH GLAD made4
17.7 years ago Aedin Culhane ▴ 510
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0
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646
views
fedora core 5 x86_64 rpm extras
GLAD GLAD
17.6 years ago D.Enrique ESCOBAR ESPINOZA ▴ 360
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1
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1.1k
views
Help with GenePix files
Normalization marray GLAD Normalization marray GLAD
updated 17.1 years ago by ★ 7.4k • written 17.1 years ago by ▴ 310
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0
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948
views
FDR of enrichment analysis and other questions on GOstats
Cancer GOstats GLAD Cancer GOstats GLAD
16.7 years ago Serge Eifes ▴ 90
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0
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777
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how to get fewer cut points with DNAcopy or GLAD
SNP affy DNAcopy GLAD SNP affy DNAcopy GLAD
16.7 years ago Wittner, Ben ▴ 290
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7
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1.8k
views
segmentation for Affy SNP arrays
SNP CGH affy GLAD snapCGH SNP CGH affy GLAD snapCGH
updated 16.6 years ago by ▴ 250 • written 16.6 years ago by ▴ 440
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2
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1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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4
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1.4k
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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2
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1.1k
views
hyperGTest and HyperGParams
Microarray Annotation GLAD Category Microarray Annotation GLAD Category
updated 16.5 years ago by ★ 5.5k • written 16.5 years ago by ▴ 500
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1
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1.1k
views
Help needed with aroma.affymetrix package to extract copy-numbers
Normalization cdf GLAD Normalization cdf GLAD
updated 16.2 years ago by ★ 2.4k • written 16.2 years ago by ▴ 270
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0
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1.5k
views
Cutoff to use for IQR filtering in genefilter
genefilter affy limma GeneSpring affylmGUI GLAD SIM genefilter affy limma GeneSpring
15.8 years ago Mark Cowley ▴ 400
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0
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683
views
REPRESENTATIVES NEEDED @ STEELBEL.BE
GLAD GLAD
15.8 years ago R.HIMPE ▴ 10
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2
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1.3k
views
Adding a text label to the classvec colour bar in heatplot
Clustering Cancer graph GLAD Clustering Cancer graph GLAD
updated 15.7 years ago by ▴ 460 • written 15.7 years ago by ★ 6.5k
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1
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904
views
limma background correction
limma GLAD limma GLAD
updated 15.7 years ago by 50k • written 15.7 years ago by ▴ 340
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4
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1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
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2
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1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 15.2 years ago by 65k • written 15.2 years ago by ▴ 40
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4
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3.1k
views
retrieving mRNA sequences via biomaRt
GLAD biomaRt GLAD biomaRt
updated 14.7 years ago by ★ 13k • written 14.7 years ago by ▴ 30
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Reading GFF files into R and GenomeGraphs
Coverage Annotation Visualization convert GLAD GenomeGraphs rtracklayer IRanges Coverage
14.7 years ago Michael Dondrup ▴ 140
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0
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1.0k
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general CGH threshold question
aCGH CGH aCGH GLAD snapCGH aCGH CGH aCGH GLAD snapCGH
14.7 years ago Wolfgang RAFFELSBERGER ▴ 140
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7
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1.4k
views
problem to compute copy number with crlmm
GLAD crlmm GLAD crlmm
updated 14.5 years ago by ▴ 250 • written 14.5 years ago by ▴ 40
0
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13
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1.7k
views
problem with data processing in R
PROcess GLAD PROcess GLAD
updated 14.4 years ago by ★ 1.7k • written 14.4 years ago by ▴ 170
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4
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1.5k
views
Positive correlation between dye-swap technical replicates
Normalization Clustering probe limma GLAD Normalization Clustering probe limma GLAD
14.3 years ago Michał Góralski ▴ 40
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4
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1.1k
views
Discrepancy on results from gcrma function and justGCRMA
gcrma GLAD gcrma GLAD
updated 14.2 years ago by 65k • written 14.2 years ago by ★ 2.0k
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1
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1.6k
views
Design matrix for time course analysis with maSigPro
GLAD maSigPro GLAD maSigPro
updated 13.9 years ago by ★ 13k • written 13.9 years ago by ▴ 10
0
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1
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1.3k
views
write.XStringView/write.XStringSet highly inefficient (solved)
Cancer BSgenome PROcess GLAD BSgenome Cancer BSgenome PROcess GLAD BSgenome
updated 13.7 years ago by ★ 13k • written 13.7 years ago by ▴ 550
0
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2
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2.2k
views
problem installing 'GLAD' package
cdf GLAD cdf GLAD
13.4 years ago Shenglin Zheng ▴ 20
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1
reply
1.4k
views
[Rocky] - Clarification for finding SNPs at 3'UTR, 5'UTR, CDS genomic regions
SNP Cancer GLAD SNP Cancer GLAD
updated 13.3 years ago by 16k • written 13.3 years ago by ▴ 30
0
votes
1
reply
843
views
Newbie question
GLAD GLAD
updated 13.3 years ago by 65k • written 13.3 years ago by ▴ 30
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votes
1
reply
1.3k
views
edgeR glm fit error
GO GLAD edgeR GO GLAD edgeR
13.2 years ago Gordon Smyth 50k
0
votes
1
reply
1.3k
views
how to do paired t-tests for multiple subgroups [was: warnings or potential problems in limma procedure]
Cancer limma GLAD Category Cancer limma GLAD Category
updated 13.0 years ago by ▴ 100 • written 13.0 years ago by 50k
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votes
1
reply
877
views
Rgraphviz windows version incompatible with current Graphviz
Rgraphviz PROcess GLAD Rgraphviz PROcess GLAD
updated 13.0 years ago by 25k • written 13.0 years ago by ▴ 10
0
votes
2
replies
837
views
Help with the weaver example from limma package
Annotation GLAD Annotation GLAD
updated 12.8 years ago by 50k • written 12.9 years ago by ▴ 20
50 results • Page 1 of 1
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Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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