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glmfit
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EdgeR - How to set up the design matrix for a multifactorial experimental design with interactions?
edger
edger main and interaction effects
glmfit
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
D
▴ 10
3
votes
1
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5.2k
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edgeR: exactTest, glmFIt or glmQLFit approach?
edger
rnaseq
glm
glmfit
updated 7.8 years ago by
Aaron Lun
★ 28k • written 7.8 years ago by
alessia.donato
• 0
0
votes
3
replies
2.0k
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Standard errors of fitted values from glmFit in edgeR
edger
standard error
glmfit
7.8 years ago
david.hughes
• 0
7
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5
replies
3.5k
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edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 8.4 years ago by
Aaron Lun
★ 28k • written 8.4 years ago by
cadeans
• 0
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
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Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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