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glmfit
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EdgeR - How to set up the design matrix for a multifactorial experimental design with interactions?
edger
edger main and interaction effects
glmfit
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
D
▴ 10
3
votes
1
reply
6.3k
views
edgeR: exactTest, glmFIt or glmQLFit approach?
edger
rnaseq
glm
glmfit
updated 8.8 years ago by
Aaron Lun
★ 28k • written 8.8 years ago by
alessia.donato
• 0
0
votes
3
replies
2.5k
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Standard errors of fitted values from glmFit in edgeR
edger
standard error
glmfit
8.9 years ago
david.hughes
• 0
7
votes
5
replies
4.2k
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edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 9.5 years ago by
Aaron Lun
★ 28k • written 9.5 years ago by
cadeans
• 0
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Comment: parameters of filterByExpr
by
Paul Harrison
▴ 110
It might be worth trying limma-voom (or limma-trend) instead of a GLM based method. In our experience these are less prone to this problem.…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Gordon Smyth
52k
voomLmFit() is in edgeR instead of limma because it needs to call edgeR::glmFit() internally to determine which of the zero observations al…
Comment: limma::voom vs edgeR::voomLmFit - when to use?
by
Geoff
• 0
Just wondering--why was this function put into `edgeR` rather than `limma`? Maybe a bit technical, but it is a little confusing from an out…
Comment: cannot download atena annotation for human
by
Davide
• 0
Hi Robert, I was able to solve the problem. Indeed, it stems from the co-occurrence of two different AnnotationHub available for hg38. …
Comment: Setting ylims in bam coverage plot and assigning compound sashimi numbers to ove
by
macdonaldfrench7286566
• 0
Regarding the ylim for the coverage [space waves][1], have you tried accessing the ylim slot of the CoverageTrack object after you've creat…
Votes
Comment: parameters of filterByExpr
GAlignments Cigar to GRanges
Answer: GAlignments Cigar to GRanges
parameters of filterByExpr
Answer: parameters of filterByExpr
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