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glmfit
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EdgeR - How to set up the design matrix for a multifactorial experimental design with interactions?
edger
edger main and interaction effects
glmfit
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
D
• 0
3
votes
1
reply
4.4k
views
edgeR: exactTest, glmFIt or glmQLFit approach?
edger
rnaseq
glm
glmfit
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
alessia.donato
• 0
0
votes
3
replies
1.6k
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Standard errors of fitted values from glmFit in edgeR
edger
standard error
glmfit
7.0 years ago • updated 6.9 years ago
david.hughes
• 0
7
votes
5
replies
3.1k
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edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 7.6 years ago by
Aaron Lun
★ 28k • written 7.6 years ago by
cadeans
• 0
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Comment: Genelist input for ClusterProfiler
by
Sofia
• 0
Hi Kevin, the input of gseKEGG is the same input of gseGO? I appreciate any help
Answer: error in ChAMP loading file
by
francis10bacon
• 0
Confirm that the IDAT files are in the correct directory and follow the required naming convention. Make sure the IDAT files are compatible…
Comment: Interpret plot from DiffBind
by
Chris
• 0
I sorted Fold decreasing. When I filter out genes with fold > 2.5 and filter out genes with fold < -2.5 and got 1287 genes appear in both s…
Comment: Interpret plot from DiffBind
by
Chris
• 0
Thank you so much. I think the function is `dba.report()`. more_open_in_disease: 79113 more_closed_in_disease: 36828 So there are 79113 pea…
Comment: Interpret plot from DiffBind
by
Chris
• 0
Hi Rory, when I run your code, I got this error: Error: unexpected ')' in: " matrices_color=list(c("white", "ma…
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A: Renaming the seqlevels in a transcript database from GenomicFeatures
A: ggbio error: Objects of type OrganismDb not supported by autoplot
Answer: DeSEQ 2 Error: some values in assay are negative
DESeq2 Error from Installing a Package
Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
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