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Comment: Development of MSstat workflow to analyze DIA time series data
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Gordon Smyth
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Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR
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Gordon Smyth
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Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
Comment: Clarification on counting in Rsubread (featureCounts)
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Gordon Smyth
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Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package
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Nguyen
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0
I keep running into this error, please help:
```
Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe
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James W. MacDonald
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There is an example of how you can do this in the [DESeq vignette][1].
An alternative would be to fit a linear mixed model using the `vari…
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