Bioconductor Glmgampoi

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DESeq2 independentfiltering glmGamPoi

5 months ago • updated 4 months ago Bob ▴ 10

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1.1k

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DESeq2 glmGamPoi offset edgeR scRNAseq

updated 6 months ago by Gordon Smyth 52k • written 6 months ago by Alec • 0

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700

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DESeq2 glmGamPoi

10 months ago I-Hsuan Lin ▴ 10

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2.4k

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DESeq2 glmGamPoi DEXSeq

updated 18 months ago by alexandresegers ▴ 20 • written 2.2 years ago by jeremymsimon ▴ 20

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2.1k

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glmGamPoi

updated 2.2 years ago by ATpoint ★ 4.6k • written 2.2 years ago by sina.tadayon • 0

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1.5k

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glmGamPoi BiocManager

updated 2.2 years ago by Vincent J. Carey, Jr. 6.7k • written 2.2 years ago by i.am.filippov • 0

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2.8k

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DESeq2 glmGamPoi scRNAseq

3.9 years ago tatyana.perlova • 0

7 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280

`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…

Answer: affymetrix by James W. MacDonald 67k

When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…

Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k

The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …

Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0

It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!

Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

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Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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