Bioconductor Glmlrt()

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1.5k

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edger design matrix glmlrt() glmQFTest() paired design

5.9 years ago oakhamwolf • 0

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2.0k

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EdgeR glmlrt() ql f-test

7.9 years ago • updated 7.2 years ago elineverbon ▴ 20

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3.8k

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edger contrast covariate glmlrt()

7.4 years ago Jeff Skinner • 0

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1.3k

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edger differential gene expression glmlrt()

7.7 years ago simarsidhu25 • 0

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3.0k

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edger differential gene expression glmlrt()

7.8 years ago simarsidhu25 • 0

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3.8k

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edger glmfit glmlrt()

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by cadeans • 0

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2.0k

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edger glmlrt() differential expression design and contrast matrix

updated 9.2 years ago by Gordon Smyth 51k • written 9.2 years ago by carlgdeboer • 0

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4.0k

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edger rnaseq glmlrt()

updated 9.5 years ago by James W. MacDonald 67k • written 9.5 years ago by MBWatson • 0

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7.3k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 9.7 years ago by Aaron Lun ★ 28k • written 9.7 years ago by Ekarl2 ▴ 80

9 results • Page 1 of 1

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Answer: KEGGgraph result difference by alex.pico ▴ 20

I'm not surprised that this fails. Not all GraphNELs nor igraphs are the same, so these chains of conversions are fraught with peril. Assu…

Answer: In the sesame package, what does the estimate output mean from testEnrichment() by James W. MacDonald 67k

It's right there in the output (`Log2(OR)`). It's doing a Fisher's exact test, which returns an odds ratio, and the output is the log odds …

Comment: WGCNA Choosing soft threshold power below R^2 0.8 by Lluís Revilla Sancho ▴ 730

This is not a bioconductor pacakge, but have you considered that something might be off with your data? Do you have enough samples of each …

Comment: WARNING: No Bioconductor dependencies detected. by katja.danielzik • 0

Hi Laurent, thank you for your answer! Yes, I will use the Summarized Experiment class in package. Best, Katja

Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes by venusian.martin • 0

EDIT: I managed to find the documentation where `sublong` is noted :) When I use sublong with the same inputs as in my OP, I get this err…

Votes

C: Usability of ERCC spike-ins in standard RNAseq experiments

A: Usability of ERCC spike-ins in standard RNAseq experiments

A: Using the ERCC spike as a normalization factor for a custom algorithm

Answer: Cannabis and KEGGgraph

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Popular Question to Robert Castelo ★ 3.4k