Showing : glmlrt() • reset
2
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EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger design matrix glmlrt() glmQFTest() paired design
6.1 years ago oakhamwolf • 0
4
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15
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2.1k
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Adjusting for procedural effect and deciding on statistical test
EdgeR glmlrt() ql f-test
8.1 years ago • updated 7.4 years ago elineverbon ▴ 20
0
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7
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3.9k
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Computing contrasts with a covariate using edgeR glmLRT()
edger contrast covariate glmlrt()
7.6 years ago Jeff Skinner • 0
1
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6
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1.3k
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design of edgeR GLM test
edger differential gene expression glmlrt()
8.0 years ago simarsidhu25 • 0
4
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7
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3.1k
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Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger differential gene expression glmlrt()
8.0 years ago simarsidhu25 • 0
7
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5
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3.9k
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edgeR effects of design on testing main effects and interactions
edger glmfit glmlrt()
updated 9.1 years ago by ★ 28k • written 9.1 years ago by • 0
4
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8
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2.1k
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EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger glmlrt() differential expression design and contrast matrix
updated 9.5 years ago by 52k • written 9.5 years ago by • 0
5
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7
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4.2k
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How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger rnaseq glmlrt()
updated 9.7 years ago by 67k • written 9.7 years ago by • 0
6
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7
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7.5k
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EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR glmLRT() multiple factor design multiple testing correction
updated 9.9 years ago by ★ 28k • written 9.9 years ago by ▴ 80
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Answer: contrast matrix design for a continuous variable by Gordon Smyth 52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd by joseph.joonsang • 0
> dim(spe) [1] 19962 425
Comment: fail to use addPerROIQC in Rmd by liu.n • 0
Hi, what's the output from `dim(spe)`?
Answer: DESeq2- merging technical vs biological replicates by Michael Love 43k
Technical replicates (more sequencing of same library) you can use `collapseReplicates()`. But biological replicates are best handled wi…
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A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
Transcript-level differential expression using DESeq2
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