Bioconductor Glmlrt()

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1.6k

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EdgeR glmlrt() ql f-test

7.1 years ago • updated 6.4 years ago elineverbon ▴ 20

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edger differential gene expression glmlrt()

7.0 years ago simarsidhu25 • 0

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3.4k

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edger rnaseq glmlrt()

updated 8.7 years ago by James W. MacDonald 64k • written 8.7 years ago by MBWatson • 0

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edger design matrix glmlrt() glmQFTest() paired design

5.1 years ago oakhamwolf • 0

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2.6k

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edger differential gene expression glmlrt()

7.0 years ago simarsidhu25 • 0

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3.4k

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edger contrast covariate glmlrt()

6.6 years ago Jeff Skinner • 0

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1.8k

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edger glmlrt() differential expression design and contrast matrix

updated 8.4 years ago by Gordon Smyth 48k • written 8.5 years ago by carlgdeboer • 0

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3.3k

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edger glmfit glmlrt()

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by cadeans • 0

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7.0k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by Ekarl2 ▴ 80

9 results • Page 1 of 1

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Answer: RNASeq time course analysis, missing time points for control by Gordon Smyth 48k

You could fit a spline trend with design matrix `treatment+spline`. Then it won't matter than the control and treatment times don't match u…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Thanks James for your helpful response. This particular experimental set up is very common in iPSC studies, where multiple differentiations…

Comment: DESeq2 test for synergistic vs additive effects by Jay • 0

Why is TrtAB - TrtA - TrtB + Control "not really a thing"? i came to this forum answer when attempting to use EdgeR to answer a similar que…

Comment: NCBI protein conversion to CDNA and NCBI gene (in R) by Gordon Smyth 48k

Continuation of https://support.bioconductor.org/p/9155428/

Comment: Why is DMRcate not available for Bioconductor version 3.18? by Tim Peters ▴ 150

Thanks Daniel, Gordon and Lori for flagging this. DSS is only needed for the vignette so I'll remove that section, plus the dependency, som…

Votes

Answer: Confused about the CPM and TMM normalization in edgeR

Answer: Differential gene expression analysis

Comment: Why is DMRcate not available for Bioconductor version 3.18?

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