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glmlrt()
•
reset
2
votes
2
replies
1.6k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
6.5 years ago
oakhamwolf
• 0
0
votes
7
replies
4.1k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger
contrast
covariate
glmlrt()
8.0 years ago
Jeff Skinner
• 0
1
vote
6
replies
1.5k
views
design of edgeR GLM test
edger
differential gene expression
glmlrt()
8.4 years ago • updated 8.3 years ago
simarsidhu25
• 0
4
votes
7
replies
3.3k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger
differential gene expression
glmlrt()
8.4 years ago
simarsidhu25
• 0
4
votes
15
replies
2.3k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
8.5 years ago • updated 7.8 years ago
elineverbon
▴ 20
7
votes
5
replies
4.1k
views
edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 9.5 years ago by
Aaron Lun
★ 28k • written 9.5 years ago by
cadeans
• 0
4
votes
8
replies
2.2k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger
glmlrt()
differential expression
design and contrast matrix
updated 9.8 years ago by
Gordon Smyth
52k • written 9.8 years ago by
carlgdeboer
• 0
5
votes
7
replies
4.4k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger
rnaseq
glmlrt()
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
MBWatson
• 0
6
votes
7
replies
7.7k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR
glmLRT()
multiple factor design
multiple testing correction
updated 10.3 years ago by
Aaron Lun
★ 28k • written 10.3 years ago by
Ekarl2
▴ 80
9 results • Page
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Comment: How to convert transcript counts to gene counts in R?
by
ben
• 0
Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/
Answer: EuroBioC2024 abstract submission is open!
by
Ali
• 0
[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…
Answer: ROAST for small sets
by
Gordon Smyth
52k
The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…
Comment: FlowSOM library requires igraph but igraph does not install
by
Szabolcs
• 0
The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Kinnary
▴ 20
Thank you very much for the vis suggestion!
Votes
Answer: ROAST for small sets
Answer: ROAST for small sets
A: conceptual question about FDR, FDR adjusted p-value and q-value
Comment: edgeR::cpm() results in negative values from raw counts of 0
Comment: edgeR::cpm() results in negative values from raw counts of 0
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