Bioconductor Glmlrt()

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1.2k

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edger design matrix glmlrt() glmQFTest() paired design

5.1 years ago oakhamwolf • 0

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3.4k

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edger contrast covariate glmlrt()

6.7 years ago • updated 6.6 years ago Jeff Skinner • 0

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1.0k

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edger differential gene expression glmlrt()

7.0 years ago simarsidhu25 • 0

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2.6k

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edger differential gene expression glmlrt()

7.0 years ago simarsidhu25 • 0

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1.6k

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EdgeR glmlrt() ql f-test

7.1 years ago • updated 6.4 years ago elineverbon ▴ 20

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3.3k

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edger glmfit glmlrt()

updated 8.1 years ago by Aaron Lun ★ 28k • written 8.1 years ago by cadeans • 0

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1.8k

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edger glmlrt() differential expression design and contrast matrix

updated 8.5 years ago by Gordon Smyth 49k • written 8.5 years ago by carlgdeboer • 0

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3.4k

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edger rnaseq glmlrt()

updated 8.7 years ago by James W. MacDonald 64k • written 8.7 years ago by MBWatson • 0

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7.0k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 8.9 years ago by Aaron Lun ★ 28k • written 8.9 years ago by Ekarl2 ▴ 80

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Looks good then.

Answer: DESeq2 : stat or lfcshrink for GSEA analysis by Michael Love 41k

There have been many threads on this support site on this topic.

Answer: Filter genes by expression for voomLmFit by James W. MacDonald 64k

`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…

Comment: How to get DMR for Infinium methylation EPIC v2 by James W. MacDonald 64k

You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…

Comment: SingleR annotation of several slots/patients by Bine ▴ 20

Ah, I just found the function JoinLayers.. I think this should help...

Votes

Answer: SingleR annotation of several slots/patients

Answer: List of Deprecated Packages for Bioc3.18

Attempting to import SBML file using R

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

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Popular Question to Henrik Bengtsson ★ 2.4k

Popular Question to paul.johnston ▴ 10

Teacher to Mike Smith ★ 6.2k