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glmlrt()
•
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2
votes
2
replies
1.2k
views
EdgeR User Guide: use of glmLRT vs glmQLF in oral carcinoma Case Study
edger
design matrix
glmlrt()
glmQFTest()
paired design
5.1 years ago
oakhamwolf
• 0
0
votes
7
replies
3.4k
views
Computing contrasts with a covariate using edgeR glmLRT()
edger
contrast
covariate
glmlrt()
6.7 years ago • updated 6.6 years ago
Jeff Skinner
• 0
1
vote
6
replies
1.0k
views
design of edgeR GLM test
edger
differential gene expression
glmlrt()
7.0 years ago
simarsidhu25
• 0
4
votes
7
replies
2.6k
views
Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
edger
differential gene expression
glmlrt()
7.0 years ago
simarsidhu25
• 0
4
votes
15
replies
1.6k
views
Adjusting for procedural effect and deciding on statistical test
EdgeR
glmlrt()
ql f-test
7.1 years ago • updated 6.4 years ago
elineverbon
▴ 20
7
votes
5
replies
3.3k
views
edgeR effects of design on testing main effects and interactions
edger
glmfit
glmlrt()
updated 8.1 years ago by
Aaron Lun
★ 28k • written 8.1 years ago by
cadeans
• 0
4
votes
8
replies
1.8k
views
EdgeR: batches and samples over-specify system, how to contrast un-modeled variables?
edger
glmlrt()
differential expression
design and contrast matrix
updated 8.5 years ago by
Gordon Smyth
49k • written 8.5 years ago by
carlgdeboer
• 0
5
votes
7
replies
3.4k
views
How to specify 'contrast' in glmLRT command when treatments in design matrix are named with numbers, not letters
edger
rnaseq
glmlrt()
updated 8.7 years ago by
James W. MacDonald
64k • written 8.7 years ago by
MBWatson
• 0
6
votes
7
replies
7.0k
views
EdgeR: glmLRT(), Multifactorial designs and correction for multiple testing
edgeR
glmLRT()
multiple factor design
multiple testing correction
updated 8.9 years ago by
Aaron Lun
★ 28k • written 8.9 years ago by
Ekarl2
▴ 80
9 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Looks good then.
Answer: DESeq2 : stat or lfcshrink for GSEA analysis
by
Michael Love
41k
There have been many threads on this support site on this topic.
Answer: Filter genes by expression for voomLmFit
by
James W. MacDonald
64k
`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…
Comment: How to get DMR for Infinium methylation EPIC v2
by
James W. MacDonald
64k
You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…
Comment: SingleR annotation of several slots/patients
by
Bine
▴ 20
Ah, I just found the function JoinLayers.. I think this should help...
Votes
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