Bioconductor Glmlrt()

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1.6k

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edger design matrix glmlrt() glmQFTest() paired design

6.5 years ago oakhamwolf • 0

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4.1k

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edger contrast covariate glmlrt()

8.0 years ago Jeff Skinner • 0

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1.5k

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edger differential gene expression glmlrt()

8.4 years ago • updated 8.3 years ago simarsidhu25 • 0

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3.3k

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edger differential gene expression glmlrt()

8.4 years ago simarsidhu25 • 0

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2.3k

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EdgeR glmlrt() ql f-test

8.5 years ago • updated 7.8 years ago elineverbon ▴ 20

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4.1k

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edger glmfit glmlrt()

updated 9.5 years ago by Aaron Lun ★ 28k • written 9.5 years ago by cadeans • 0

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2.2k

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edger glmlrt() differential expression design and contrast matrix

updated 9.8 years ago by Gordon Smyth 52k • written 9.8 years ago by carlgdeboer • 0

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4.4k

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edger rnaseq glmlrt()

updated 10.1 years ago by James W. MacDonald 68k • written 10.1 years ago by MBWatson • 0

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7.7k

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edgeR glmLRT() multiple factor design multiple testing correction

updated 10.3 years ago by Aaron Lun ★ 28k • written 10.3 years ago by Ekarl2 ▴ 80

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Comment: How to convert transcript counts to gene counts in R? by ben • 0

Simply summing transcripts by gene is sufficient for use with DESeq2. [sprunki clicker][1] [1]: https://sprunkiclicker.com/

Answer: EuroBioC2024 abstract submission is open! by Ali • 0

[Promo products][1] are a smart way to boost visibility, especially with exciting updates like *News: EuroBioC2024 abstract submission is o…

Answer: ROAST for small sets by Gordon Smyth 52k

The p-values from `mroast` will be the same (up to sampling variability associated with random rotations) regardless of whether you test al…

Comment: FlowSOM library requires igraph but igraph does not install by Szabolcs • 0

The R/igraph Installation FAQ covers most issues: https://r.igraph.org/articles/installation-troubleshooting.html

Comment: edgeR::cpm() results in negative values from raw counts of 0 by Kinnary ▴ 20

Thank you very much for the vis suggestion!

Votes

Answer: ROAST for small sets

A: conceptual question about FDR, FDR adjusted p-value and q-value

Comment: edgeR::cpm() results in negative values from raw counts of 0

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