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glmnet
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Problem about use of TCGA rna-seq rsem gene results for regularized cox regression modeling
tcga
rnaseq
glmnet
voom
deseq2
7.1 years ago
panagiotis.mokos
▴ 40
4
votes
4
replies
2.5k
views
ABOUT TRANSFORMATION OF RNA-SEQ DATA FOR GLMNET COX SURVIVAL ANALYSIS
glmnet
deseq2
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
panagiotis.mokos
▴ 40
0
votes
4
replies
2.4k
views
Normalization and transformation of RNA-seq raw data for regularized linear regression models
rnaseq
glmnet
limma
voom
deseq2
7.1 years ago
panagiotis.mokos
▴ 40
0
votes
1
reply
2.1k
views
Adaptive Lasso and CrossValidation for SNV selection
adaptive-lasso
snv
biomarkers
cv
glmnet
7.4 years ago
crichard
• 0
1
vote
1
reply
1.9k
views
Which one is more trustable for Cox Proportional Hazard Model with Lasso penalty? LOOCV or K-fold cross-validation?
glmnet
cox
LOOCV
k-fold
cross validation
updated 4.6 years ago by
chris86
▴ 420 • written 4.6 years ago by
Talip Zengin
▴ 10
5 results • Page
1 of 1
Recent ...
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Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up question. Following up in In your [1-2-3 article][1], you say that > "... the …
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Comment: Error retrieving ensembl gene id using biomaRt...
by
James W. MacDonald
65k
Or that. ;-D
Votes
Install/Switch between multiple versions of R, Rstudio, and Bioconductor
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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