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globaltest
•
reset
0
votes
2
replies
1000
views
I want to use global test.
gene
r
clst
rpy
globaltest
3.1 years ago
Kim
• 0
0
votes
0
replies
887
views
Testing a gene set with globaltest
globaltest
6.9 years ago
Lluís Revilla Sancho
▴ 730
0
votes
0
replies
905
views
User defined gene or metabolite set in globaltest
globaltest
gene set
7.4 years ago
the_august
• 0
0
votes
0
replies
1.1k
views
Yeast ORF gene set analysis with globaltest (gtKEGG)
globaltest
saccharomyces cerevisiae
gtKEGG
KEGG
gene set analysis
7.8 years ago
Rebecca Ong
• 0
0
votes
3
replies
2.5k
views
Annotation in ExpressionSet object
ExpressionSet
globaltest
7.9 years ago
NS
▴ 60
0
votes
0
replies
1.0k
views
How to use CP:REACTOME subcategory under category C2 in Broad list (globaltest)
globaltest
8.1 years ago
Aditya Saxena
▴ 10
0
votes
2
replies
2.6k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure
Cancer
Biobase
tkWidgets
globaltest
BiocInstaller
BiocGenerics
Cancer
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Shields, Rusty IMS
▴ 40
0
votes
0
replies
967
views
globaltest 5.6.1 bug fix
Survival
globaltest
Survival
globaltest
12.8 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
991
views
globaltest 5.0.2
Survival
globaltest
Survival
globaltest
14.3 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
779
views
bug fix in globaltest
globaltest
globaltest
14.4 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
1
reply
1.1k
views
globaltest mulitple testing correction
Pathways
globaltest
Pathways
globaltest
updated 15.5 years ago by
Claus Mayer
▴ 340 • written 15.5 years ago by
mpg33@drexel.edu
▴ 90
0
votes
1
reply
1.1k
views
global test multiple testing correction
Pathways
globaltest
Pathways
globaltest
updated 15.5 years ago by
DEBASHIS GHOSH
▴ 40 • written 15.5 years ago by
Michael Gormley
▴ 60
0
votes
0
replies
3.1k
views
topGO enrichment using ensembl gene list
Microarray
Annotation
GO
PROcess
globaltest
topGO
Microarray
Annotation
GO
PROcess
topGO
16.1 years ago
Adrian Alexa
▴ 400
0
votes
1
reply
1.2k
views
globaltest - multinomial model
Survival
affy
vsn
limma
globaltest
affyio
Survival
affy
vsn
limma
globaltest
affyio
updated 16.7 years ago by
Goeman, J.J. MSTAT
▴ 150 • written 16.7 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
1.0k
views
globaltest
Pathways
globaltest
Pathways
globaltest
updated 17.1 years ago by
Oosting, J. PATH
▴ 550 • written 17.1 years ago by
Caroline Reiff
▴ 40
0
votes
8
replies
2.0k
views
AnnBuilder and Kegg
Pathways
GO
Survival
Cancer
Organism
annotate
affydata
vsn
AnnBuilder
globaltest
GO
vsn
updated 17.4 years ago by
David Lapointe
▴ 190 • written 17.4 years ago by
John Zhang
★ 2.9k
0
votes
0
replies
1.1k
views
globaltest: pairwise design?
globaltest
globaltest
17.6 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
819
views
geneplot problem
GO
globaltest
GO
globaltest
17.9 years ago
Dario Greco
▴ 310
0
votes
0
replies
929
views
globaltest covariates problem
globaltest
globaltest
18.3 years ago
Dario Greco
▴ 310
0
votes
3
replies
1.5k
views
R: Pathway Information
Genetics
Pathways
Cancer
probe
globaltest
Genetics
Pathways
Cancer
probe
globaltest
updated 18.9 years ago by
Alberto Goldoni
▴ 360 • written 18.9 years ago by
John Zhang
★ 2.9k
0
votes
0
replies
1.1k
views
globaltest procedure
Pathways
Survival
globaltest
Pathways
Survival
globaltest
19.1 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
1
reply
1.1k
views
Globaltest
globaltest
globaltest
updated 19.2 years ago by
Oosting, J. PATH
▴ 550 • written 19.2 years ago by
Jiuzhou song
▴ 100
0
votes
2
replies
1.7k
views
Installation Problem on OS X
GO
geneplotter
graph
Rgraphviz
pamr
globaltest
GO
geneplotter
graph
Rgraphviz
pamr
updated 19.4 years ago by
Marcus Davy
▴ 680 • written 19.4 years ago by
David Rocke
▴ 10
0
votes
0
replies
901
views
new version of globaltest
globaltest
globaltest
20.1 years ago
Goeman, J.J. MSTAT
▴ 150
0
votes
0
replies
1.1k
views
Package globaltest
GO
globaltest
GO
globaltest
21.1 years ago
Jeff Gentry
★ 3.9k
25 results • Page
1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
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• 0
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50k
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