Bioconductor GmapR

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544

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gmapR

updated 3.4 years ago by Martin Morgan 25k • written 3.4 years ago by conbward • 0

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974

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gmapR

5.2 years ago Kyle Johnsen ▴ 20

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1.2k

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software error gmapr

updated 5.4 years ago by Michael Lawrence ★ 11k • written 5.4 years ago by Amer Ghalawinji • 0

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915

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gmapr

updated 6.4 years ago by Michael Lawrence ★ 11k • written 6.4 years ago by karl.nordstroem • 0

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1.4k

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gmapgenome gmapr fastafile

updated 6.9 years ago by Michael Lawrence ★ 11k • written 6.9 years ago by Kyle Johnsen ▴ 20

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1.2k

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gmapR

7.4 years ago jls2282 • 0

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gmapr gmapgenome

updated 8.2 years ago by Michael Lawrence ★ 11k • written 8.2 years ago by sean.taylor • 0

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1.9k

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gmapR

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Thomas Sandmann ▴ 90

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1.8k

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varianttools gmapr

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Johannes Rainer ★ 2.0k

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1.2k

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gmapr gmapgenome annotationhub fafile

updated 8.4 years ago by Michael Lawrence ★ 11k • written 8.4 years ago by Johannes Rainer ★ 2.0k

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2.5k

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gmapR GmapGenome error create

8.9 years ago lelemraposo • 0

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894

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gmapR

9.2 years ago Chao-Jen Wong ▴ 580

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1.8k

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BiocViews VariantAnnotation Annotation biocViews Rsubread VariantAnnotation gmapR BiocViews

10.4 years ago • updated 10.3 years ago Thomas Girke ★ 1.7k

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1.2k

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GO BSgenome BSgenome gmapR GO BSgenome BSgenome gmapR

updated 10.9 years ago by Michael Lawrence ★ 11k • written 10.9 years ago by Robert Castelo ★ 3.2k

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1.5k

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gmapR gmapR

11.0 years ago Dan Tenenbaum ★ 8.2k

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1.2k

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gmapR gmapR

updated 11.2 years ago by Martin Morgan 25k • written 11.2 years ago by Guest User ★ 13k

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2.2k

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gmapR gmapR

updated 11.2 years ago by Michael Lawrence ★ 11k • written 11.2 years ago by Tim Triche ★ 4.2k

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1.1k

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Cancer genomes Rsubread gmapR Cancer genomes Rsubread gmapR

11.6 years ago Martin Morgan 25k

18 results • Page 1 of 1

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Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…

Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0

Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.

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Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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