Showing : go.db • reset
3
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1.4k
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Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 8 months ago by ★ 4.1k • written 8 months ago by ▴ 10
2
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5
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715
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How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 10 months ago by 68k • written 10 months ago by • 0
2
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17
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3.0k
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Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 14 months ago by ▴ 760 • written 14 months ago by ▴ 50
0
votes
8
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1.4k
views
GOslim missing GO term
GO.db GOslim
15 months ago amanda • 0
0
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1
reply
708
views
Which species does GO.db use
GO.db annotationTools
updated 19 months ago by ▴ 760 • written 19 months ago by • 0
0
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0
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655
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
21 months ago RuBBiT0 ▴ 10
1
vote
0
replies
597
views
Typo in GO.db manual reference
GO.db
23 months ago RuBBiT0 ▴ 10
1
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2
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1.4k
views
GO.db for Bioconductor 3.17
GO.db devel
2.1 years ago Amanda D. Clark • 0
0
votes
2
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2.6k
views
Can't install GO.db
GOexpress GO.db GOSemSim
2.3 years ago Chruut • 0
0
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1
reply
936
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.4 years ago by ▴ 780 • written 2.4 years ago by • 0
2
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1
reply
3.3k
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TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
2.8 years ago Lucía ▴ 30
1
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6
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1.6k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
votes
1
reply
3.1k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
3.4 years ago Yang • 0
0
votes
1
reply
1.2k
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
1
vote
6
replies
2.6k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.5 years ago by • 0 • written 3.5 years ago by ▴ 40
0
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1
reply
1.3k
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
3.7 years ago jabbar_campbell • 0
2
votes
2
replies
1.3k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.9 years ago decppced • 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
4.0 years ago MOHAMMAD • 0
2
votes
1
reply
1.1k
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 4.0 years ago by ▴ 780 • written 4.0 years ago by • 0
3
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2
replies
2.7k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 4.1 years ago by 25k • written 4.1 years ago by ★ 4.1k
0
votes
4
replies
1.7k
views
GO.db package can't be installed
install GO.db
updated 4.2 years ago by 25k • written 4.2 years ago by • 0
1
vote
1
reply
1.8k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
0
votes
4
replies
1.4k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
0
votes
2
replies
1.7k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.7 years ago by 68k • written 4.7 years ago by ★ 2.0k
0
votes
1
reply
2.3k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.8 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
2.0k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.8 years ago by 68k • written 4.8 years ago by • 0
0
votes
4
replies
1.7k
views
Error attaching TIN
software error GO.db TIN
updated 4.8 years ago by 25k • written 4.8 years ago by • 0
3
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2
replies
1.0k
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.9 years ago by 68k • written 4.9 years ago by ▴ 10
1
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4
replies
1.4k
views
Trouble installing package GO.db
GO.db
updated 5.2 years ago by 68k • written 5.2 years ago by ▴ 10
0
votes
1
reply
1.4k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
0
votes
5
replies
5.0k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
2
votes
5
replies
1.3k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
0
votes
5
replies
1.8k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
1
vote
2
replies
1.8k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 6.3 years ago by 25k • written 6.3 years ago by ★ 1.1k
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.5 years ago by • 0 • written 6.5 years ago by ▴ 10
1
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1
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1.4k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 6.6 years ago by 68k • written 6.6 years ago by • 0
2
votes
2
replies
1.7k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 6.6 years ago by 25k • written 6.6 years ago by • 0
2
votes
2
replies
1.2k
views
Troubles installing GO.db
go.db
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 20
3
votes
8
replies
2.9k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.9 years ago by 25k • written 6.9 years ago by ▴ 10
0
votes
1
reply
2.0k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
0
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0
replies
1.4k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
7.0 years ago crafy • 0
0
votes
3
replies
1.4k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
7.0 years ago dusan.petrovic • 0
0
votes
1
reply
2.7k
views
GO.db failure to install
software error go.db
7.1 years ago matt.a.bennett25890 • 0
0
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1
reply
1.9k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
0
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1
reply
2.2k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
1
vote
10
replies
3.2k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
0
votes
3
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4.8k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
8.1 years ago Sidi.Ma • 0
0
votes
2
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1.7k
views
GO.db will not download
GO.db
8.1 years ago MOD • 0
0
votes
1
reply
2.0k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 8.1 years ago by 25k • written 8.1 years ago by ▴ 10
1
vote
5
replies
5.8k
views
can not able to install go.db
go.db
updated 8.3 years ago by 25k • written 8.3 years ago by • 0
50 results • Page 1 of 1
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Answer: Use of org.Rn.eg.db with GRCr8 reference genome by James W. MacDonald 68k
You've got it backwards. It should be ``` adult_res_df$symbol <- mapIds(org.Rn.eg.db, keys = rownames(adult_res_df), column = "ENSEMBL"…
Comment: DESeq2 swap ensembl gene id rownames with gene symbol column by Erika • 0
Alternatively, you could have added a column with the common gene names. Assuming your dataframe `df` was created using `DESeq()`, somethin…
Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k
It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…
Comment: Can't post a question? by DavideSant • 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data by silickas • 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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