Showing : go.db • reset
3
votes
1
reply
918
views
Difference between enrichGO results and Enrichr website results
Pathways GO.db clusterProfiler
updated 5 months ago by ★ 4.1k • written 5 months ago by ▴ 10
2
votes
5
replies
583
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 7 months ago by 67k • written 7 months ago by • 0
2
votes
17
replies
2.3k
views
Problem installing package, version of dependency issue
AnnotationDbi GO.db
updated 10 months ago by ▴ 760 • written 10 months ago by ▴ 50
0
votes
8
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1.2k
views
GOslim missing GO term
GO.db GOslim
12 months ago amanda • 0
0
votes
1
reply
622
views
Which species does GO.db use
GO.db annotationTools
updated 16 months ago by ▴ 760 • written 16 months ago by • 0
0
votes
0
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578
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
18 months ago RuBBiT0 ▴ 10
1
vote
0
replies
542
views
Typo in GO.db manual reference
GO.db
19 months ago RuBBiT0 ▴ 10
1
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2
replies
1.3k
views
GO.db for Bioconductor 3.17
GO.db devel
21 months ago Amanda D. Clark • 0
0
votes
2
replies
2.2k
views
Can't install GO.db
GOexpress GO.db GOSemSim
2.0 years ago Chruut • 0
0
votes
1
reply
877
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db GOfuncR GO GOSim goProfiles
updated 2.2 years ago by ▴ 780 • written 2.2 years ago by • 0
2
votes
1
reply
2.8k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
2.5 years ago Lucía ▴ 30
1
vote
6
replies
1.4k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db versioning
updated 2.9 years ago by 67k • written 2.9 years ago by • 0
0
votes
1
reply
2.8k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
3.2 years ago • updated 3.1 years ago Yang • 0
0
votes
1
reply
1.1k
views
How to use GO.db select on *ANCESTOR *CHILDREN *PARENTS etc.
GO.db
updated 3.2 years ago by 67k • written 3.2 years ago by • 0
1
vote
6
replies
2.4k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db AnnotationDbi
updated 3.3 years ago by • 0 • written 3.3 years ago by ▴ 40
0
votes
1
reply
1.2k
views
ViSEAGO
gene_ontology GOID ViSEAGO GO.db custom2GO
3.4 years ago jabbar_campbell • 0
2
votes
2
replies
1.2k
views
retrieve gene IDs from GO.db GO
GO GO.db
3.6 years ago decppced • 0
1
vote
2
replies
1.1k
views
Getting list of genes enriched in each of Biological process terms
GOstats Go.db GeneOntology
3.7 years ago MOHAMMAD • 0
2
votes
1
reply
1.1k
views
Geno Ontology Analysis using gene symbol
GO.db Annotation Clusterprofile GeneOntology
updated 3.7 years ago by ▴ 780 • written 3.7 years ago by • 0
3
votes
2
replies
2.5k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db AnnotationDbi
updated 3.9 years ago by 25k • written 3.9 years ago by ★ 4.1k
0
votes
4
replies
1.6k
views
GO.db package can't be installed
install GO.db
updated 3.9 years ago by 25k • written 3.9 years ago by • 0
1
vote
1
reply
1.7k
views
installing GO.bd for WGCNA
GO.db WGCNA
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
0
votes
4
replies
1.4k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.1 years ago by 67k • written 4.1 years ago by • 0
0
votes
2
replies
1.6k
views
Can't select GO from AnnotationHub orgDB packages
GO.db AnnotationHub OrgDB
updated 4.4 years ago by 67k • written 4.4 years ago by ★ 2.0k
0
votes
1
reply
2.1k
views
GO vs GOALL in rrvgo and GOSemSim
rrvgo GOSemSim GO.db
4.5 years ago Jenny Drnevich ★ 2.0k
1
vote
2
replies
1.8k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 4.5 years ago by 67k • written 4.5 years ago by • 0
0
votes
4
replies
1.6k
views
Error attaching TIN
software error GO.db TIN
updated 4.5 years ago by 25k • written 4.5 years ago by • 0
1
vote
2
replies
858
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.6 years ago by 67k • written 4.6 years ago by • 0
1
vote
4
replies
1.3k
views
Trouble installing package GO.db
GO.db
updated 4.9 years ago by 67k • written 4.9 years ago by • 0
0
votes
1
reply
1.3k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db hgu95av2.db R3.6.0
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
0
votes
5
replies
4.7k
views
Cannot install GO.db for R 3.6.1
GO.db R 3.6.1 source package
updated 5.4 years ago by 25k • written 5.4 years ago by • 0
2
votes
5
replies
1.2k
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 5.5 years ago by 67k • written 5.5 years ago by • 0
0
votes
5
replies
1.7k
views
hyperGTest not working on custom annotation package
GOstats AnnotationDbi GO.db
updated 5.7 years ago by 67k • written 5.8 years ago by • 0
1
vote
2
replies
1.7k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 6.0 years ago by 25k • written 6.0 years ago by ★ 1.1k
3
votes
3
replies
1.3k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO ontology GO.db
updated 6.2 years ago by • 0 • written 6.2 years ago by ▴ 10
1
vote
1
reply
1.2k
views
GO.db: searching for "top" GO term for list of terms
GO go.db
updated 6.3 years ago by 67k • written 6.3 years ago by • 0
2
votes
2
replies
1.6k
views
GO.db source obo file?
gene ontology gostats go.db ontologies
updated 6.3 years ago by 25k • written 6.3 years ago by • 0
2
votes
2
replies
1.1k
views
Troubles installing GO.db
go.db
updated 6.5 years ago by 25k • written 6.5 years ago by ▴ 20
3
votes
8
replies
2.8k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.6 years ago by 25k • written 6.6 years ago by ▴ 10
0
votes
1
reply
1.9k
views
Issue installing packages ATACseqQC and GO.db
GO.db biocinstaller package installation atacseqqc
updated 6.7 years ago by ★ 1.3k • written 6.7 years ago by • 0
0
votes
0
replies
1.4k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats go.db
6.7 years ago crafy • 0
0
votes
3
replies
1.3k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db annotate
6.8 years ago dusan.petrovic • 0
0
votes
1
reply
2.6k
views
GO.db failure to install
software error go.db
6.8 years ago matt.a.bennett25890 • 0
0
votes
1
reply
1.8k
views
GO.db, pfma.db, KEGG.db
pfam go.db kegg.db
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
0
votes
1
reply
2.1k
views
GO.db won't install for using goseq package
GO.db goseq package installation error
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
1
vote
10
replies
3.0k
views
Error installing Annaffy
affy annaffy go.db kegg.db
updated 7.6 years ago by 67k • written 7.7 years ago by • 0
0
votes
3
replies
4.5k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor R go.db annotationdbi dependency
7.8 years ago Sidi.Ma • 0
0
votes
2
replies
1.6k
views
GO.db will not download
GO.db
7.8 years ago MOD • 0
0
votes
1
reply
1.9k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db WGCNA
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 10
1
vote
5
replies
5.7k
views
can not able to install go.db
go.db
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
50 results • Page 1 of 1
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Comment: lfcShrink and alpha value by cropero • 0
Thank you so much! Would that be equivalent to perform `res <- results(dds, contrast = c("conditions", "wild_type_114_2_no_carbon", "wild_t…
Comment: pathview - multiple states by Philippine • 0
Thank you! Here a subset of genes that really works with "ame04145". data <- data.frame( EntrezID = c(100577548, 100577764, 406…
Comment: pathview - multiple states by Guido Hooiveld ★ 4.1k
A quick comment after I copied/pasted your code: when using `geneList1` in the 3rd code chunk I do **not** get a nice plot... I rather got …
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Adam • 0
Hi Aaron, Thanks a lot for your help! As you mentioned, I checked my data and it is "DelayedMatrix". I don't know the detailed differe…
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data by Aaron Lun ★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
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Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
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Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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