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go.db
•
reset
4
votes
2
replies
3.8k
views
Cannot load or update GO.db
GO.db
bioclite
9.0 years ago
Steve Pederson
▴ 170
4
votes
2
replies
1.8k
views
mapIds to get GO terms
annotationdbi
go.db
updated 8.4 years ago by
Martin Morgan
25k • written 8.4 years ago by
sisterdot
▴ 10
3
votes
8
replies
2.5k
views
Problem using GOTERM[["x"]] from GO.db
GO.DB
updated 6.0 years ago by
Martin Morgan
25k • written 6.0 years ago by
karl.stamm
▴ 10
3
votes
3
replies
1.1k
views
source of GO ontology and GO annotations in Bioconductor for GO.db
GO
ontology
GO.db
updated 5.6 years ago by
apkmirrorproject
• 0 • written 5.6 years ago by
marcinjoachimiak
▴ 10
3
votes
2
replies
1.9k
views
how to use select() to retrieve GO Biological Process Ancestors?
GO.db
AnnotationDbi
updated 3.2 years ago by
Martin Morgan
25k • written 3.2 years ago by
Guido Hooiveld
★ 3.9k
2
votes
2
replies
1.3k
views
GO.db source obo file?
gene ontology
gostats
go.db
ontologies
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
brismiller
• 0
2
votes
2
replies
950
views
Troubles installing GO.db
go.db
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Aurora
▴ 20
2
votes
17
replies
971
views
Problem installing package, version of dependency issue
AnnotationDbi
GO.db
updated 3 months ago by
Lluís Revilla Sancho
▴ 730 • written 3 months ago by
alexandre.blais
▴ 50
2
votes
1
reply
910
views
Geno Ontology Analysis using gene symbol
GO.db
Annotation
Clusterprofile
GeneOntology
updated 3.1 years ago by
Basti
▴ 770 • written 3.1 years ago by
MOHAMMAD
• 0
2
votes
6
replies
4.1k
views
DiffBind installation doesn't work
diffbind
go.db
8.9 years ago • updated 8.8 years ago
Gary
▴ 20
2
votes
2
replies
983
views
retrieve gene IDs from GO.db GO
GO
GO.db
3.0 years ago
decppced
• 0
2
votes
5
replies
942
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db
annota
org.Hs.eg.
GO.db
updated 4.8 years ago by
James W. MacDonald
65k • written 4.8 years ago by
brunogiotti
• 0
1
vote
2
replies
1.4k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db
clusterprofiler
updated 5.4 years ago by
Martin Morgan
25k • written 5.4 years ago by
Leonardo Collado Torres
★ 1.0k
1
vote
6
replies
1.1k
views
Does a given Bioconductor version always use the same version of a database, e.g. GO.db?
GO.db
versioning
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
rebeliscu
• 0
1
vote
1
reply
1.7k
views
How to install old version of GO.db in R
GO.db
R
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
animesh_10kuet
• 0
1
vote
10
replies
2.6k
views
Error installing Annaffy
affy
annaffy
go.db
kegg.db
updated 7.0 years ago by
James W. MacDonald
65k • written 7.0 years ago by
Angela
• 0
1
vote
0
replies
350
views
Typo in GO.db manual reference
GO.db
12 months ago
RuBBiT0
▴ 10
1
vote
4
replies
1.1k
views
Trouble installing package GO.db
GO.db
updated 4.3 years ago by
James W. MacDonald
65k • written 4.3 years ago by
C A
• 0
1
vote
2
replies
697
views
Relations used in GO.db GOBPANCESTOR
GO.db
updated 4.0 years ago by
James W. MacDonald
65k • written 4.0 years ago by
max.neal
• 0
1
vote
2
replies
1.3k
views
Help installing clusterProfiler
clusterProfiler
DO.db
GO.db
lazy load fail
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
masaver
• 0
1
vote
5
replies
5.3k
views
can not able to install go.db
go.db
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
jarraya.amina.fst
• 0
1
vote
1
reply
1.3k
views
installing GO.bd for WGCNA
GO.db
WGCNA
updated 3.3 years ago by
James W. MacDonald
65k • written 3.3 years ago by
VictoriaL
• 0
1
vote
2
replies
2.6k
views
Installation Error- GO.db
GO.db
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
cpotter710
▴ 10
1
vote
2
replies
888
views
Getting list of genes enriched in each of Biological process terms
GOstats
Go.db
GeneOntology
3.1 years ago
MOHAMMAD
• 0
1
vote
6
replies
1.8k
views
what's the difference between this two AnnotationDbi::select type in GO select
GO.db
AnnotationDbi
updated 2.6 years ago by
Jacky
• 0 • written 2.6 years ago by
Guandong Shang
▴ 40
1
vote
1
reply
1.0k
views
GO.db: searching for "top" GO term for list of terms
GO
go.db
updated 5.7 years ago by
James W. MacDonald
65k • written 5.7 years ago by
TB18
• 0
1
vote
1
reply
1.9k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler
GO.db
22 months ago
Lucía
▴ 10
1
vote
2
replies
858
views
GO.db for Bioconductor 3.17
GO.db
devel
14 months ago
Amanda D. Clark
• 0
0
votes
8
replies
677
views
GOslim missing GO term
GO.db
GOslim
4 months ago
amanda
• 0
0
votes
1
reply
356
views
Which species does GO.db use
GO.db
annotationTools
updated 8 months ago by
Lluís Revilla Sancho
▴ 730 • written 8 months ago by
youngleel
• 0
0
votes
0
replies
376
views
plotGOTermGraph connects all subtrees to the root node
GO.db
GOstats
10 months ago
RuBBiT0
▴ 10
0
votes
5
replies
1.5k
views
hyperGTest not working on custom annotation package
GOstats
AnnotationDbi
GO.db
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
lucas.michel
• 0
0
votes
2
replies
1.3k
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 3.7 years ago by
James W. MacDonald
65k • written 3.7 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
1.7k
views
Error attaching GO.db package
GO.db
loadnamespace
annotation
chippeakanno
updated 9.1 years ago by
Dan Tenenbaum
★ 8.2k • written 9.1 years ago by
adrianna-christina
▴ 10
0
votes
1
reply
1.3k
views
GO.db/GOSim bugged or my bad?
go.db
software error
bug
updated 9.0 years ago by
Hervé Pagès
16k • written 9.0 years ago by
lejeczek
▴ 10
0
votes
1
reply
1.2k
views
Gene Ontolology and Annotation
Gene Ontolology
Annotation
GO.db
org.Sc.sgd.db
org.Hs.eg.db
updated 8.3 years ago by
Diego Diez
▴ 760 • written 8.3 years ago by
msp.cse
• 0
0
votes
0
replies
2.3k
views
Trouble with GO.db - installation of package GO.db had non-zero exit status
software error
GO.db
7.9 years ago
christin.berlin
• 0
0
votes
3
replies
1.5k
views
GO.db installation error
GO
go.db
7.5 years ago
cananhas
• 0
0
votes
1
reply
1.0k
views
I cannot install the package GO.db
GO.db
7.4 years ago
chisad
• 0
0
votes
1
reply
1.8k
views
Windows fails to install package from source 'tar.gz', e.g., "GO.db"
go.db
WGCNA
updated 7.2 years ago by
Martin Morgan
25k • written 7.2 years ago by
s3462450
▴ 10
0
votes
2
replies
1.5k
views
GO.db will not download
GO.db
7.2 years ago
MOD
• 0
0
votes
3
replies
4.0k
views
ERROR: dependency 'AnnotationDbi' is not available for package 'GO.db'
bioconductor
R
go.db
annotationdbi
dependency
7.2 years ago
Sidi.Ma
• 0
0
votes
1
reply
1.5k
views
GO.db, pfma.db, KEGG.db
pfam
go.db
kegg.db
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
josefina.lascanomaillard
• 0
0
votes
1
reply
2.3k
views
GO.db failure to install
software error
go.db
6.2 years ago
matt.a.bennett25890
• 0
0
votes
3
replies
1.1k
views
How to annotate gene ontologies based on Gene Symbols in R
GO.db
annotate
6.1 years ago
dusan.petrovic
• 0
0
votes
0
replies
1.1k
views
GOstats install Error : .onLoad failed in loadNamespace() for 'GO.db'
gostats
go.db
6.1 years ago
crafy
• 0
0
votes
1
reply
1.6k
views
Issue installing packages ATACseqQC and GO.db
GO.db
biocinstaller
package installation
atacseqqc
updated 6.1 years ago by
Ou, Jianhong
★ 1.3k • written 6.1 years ago by
n.pantelireis16
• 0
0
votes
1
reply
2.0k
views
GO.db won't install for using goseq package
GO.db
goseq
package installation
error
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
veerle
• 0
0
votes
5
replies
4.1k
views
Cannot install GO.db for R 3.6.1
GO.db
R 3.6.1
source package
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
Quinten
• 0
0
votes
1
reply
1.1k
views
package 'hgu95av2.db' is not available (for R version 3.6.0)
Go.db
hgu95av2.db
R3.6.0
updated 4.7 years ago by
Martin Morgan
25k • written 4.7 years ago by
sarahqd
• 0
50 results • Page
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Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
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