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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 4 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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228

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 6 weeks ago by belinda.phipson ▴ 40 • written 6 weeks ago by s.malik • 0

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327

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GO limma CAMERA

updated 9 weeks ago by Gordon Smyth 50k • written 9 weeks ago by Tyler Sagendorf ▴ 10

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349

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GO EnrichmentBrowser

updated 11 weeks ago by James W. MacDonald 65k • written 11 weeks ago by prity6459 • 0

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526

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GO ensembldb

6 months ago • updated 5 months ago Rockbar • 0

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406

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go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

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600

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GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 10 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

8 results • Page 1 of 1

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Comment: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia) by christianhilton64 • 0

I'm less familiar with the specifics of GSVA, but I'm curious about the overall goal of this analysis. Could you provide a high-level summa…

Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k

Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…

Answer: Cannabis and KEGGgraph by deeenes ▴ 30

Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…

Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k

I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…

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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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Scholar to Robert Castelo ★ 3.2k

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