Biostar Go

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673

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DESeq2 edgeR goana GO

updated 4 months ago by Gordon Smyth 46k • written 4 months ago by Raito92 ▴ 60

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520

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clusterProfiler AnnotationHubData GO

updated 11 weeks ago by Guido Hooiveld ★ 3.3k • written 12 weeks ago by Lucía ▴ 10

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1.9k

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clusterProfiler AnnotationHub GO uniprot

updated 4 months ago by Guido Hooiveld ★ 3.3k • written 18 months ago by Alberto • 0

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510

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GO biomaRt

updated 12 months ago by Mike Smith ★ 5.7k • written 12 months ago by A • 0

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717

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go software error topgo rna-seq

updated 8 weeks ago by Marie • 0 • written 2.2 years ago by morteza.aslanzadeh ▴ 30

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2.5k

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GO annotate convert ggbio GO annotate convert ggbio

written 9.9 years ago by Stefan Dentro ▴ 70

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2.3k

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Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes

updated 5 weeks ago by pengmin.wang.1 • 0 • written 10.4 years ago by Marc Carlson ★ 7.2k

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520

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RNASeq edgeR GO GOSemSim

updated 6 months ago by Gordon Smyth 46k • written 6 months ago by David Rengel ▴ 70

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147

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Annotation GeneOntology topGO GO

updated 5 weeks ago by James W. MacDonald 60k • written 6 weeks ago by Raito92 ▴ 60

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553

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GOstats GO RNASeq

updated 8 months ago by James W. MacDonald 60k • written 8 months ago by joasmile84 ▴ 10

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2.2k

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clusterProfiler GO GO enrichment genesetenrichment

updated 5 weeks ago by pengmin.wang.1 • 0 • written 4.6 years ago by Huang, Lei [BSD] - CRI ▴ 20

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212

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edgeR GO

5 months ago Adelyn • 0

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1.8k

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GO GO

updated 3 months ago by Pavlo • 0 • written 12.7 years ago by matchmail@connect.match.com ▴ 10

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353

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RNA-sequencing KEGG GO

updated 6 months ago by Kevin Blighe 3.6k • written 6 months ago by Omurice • 0

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429

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goana RNASeq edgeR RnaSeq GO

4 months ago Raito92 ▴ 60

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123

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topGO GO

3 months ago theophile • 0

16 results • Page 1 of 1

Recent ...

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Answer: `emptyDrops()` calling 'too many' non-empty droplets by Aaron Lun ★ 27k

Perhaps there is something wonky with the TCR sequences that exclude them from the barcodes with below 100 counts. Maybe TCR sequences are …

Answer: how to do downstram analysis to cells which are subsetted after MNN batch-correc by Aaron Lun ★ 27k

In this case, you can just replace `denoisePCA` in the example with the various MNN steps. So: ``` # NOTE: not tested! sce.sub <- sce[…

Answer: how to make the "reconstructed" value in intergated scRNA-seq UMAP plot more rea by Aaron Lun ★ 27k

It is, in general, difficult to interpret the `reconstructed` assay, as batch correction is not guaranteed to do "sensible" things to the p…

Comment: How to get started with DeseqDataSet import using CSV? Is it necessary to have C by ATpoint ★ 1.4k

Please provide an example of that sheet (at best after reading into R and then shared via `dput()`) if you are seeking help. In general the…

Comment: Which is the best type of data for correlation or survival analysis by Yang Shi • 0

Hi ATpoint, thanks for your reply and show me the thread. But there are still some questions: (1) **dds <- estimateSizeFactors(dds); ntd <…

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Comment: what should be our references when 2 samples which I compare are treated and the