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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 26 days ago by jandrade • 0 • written 6.3 years ago by Huang, Lei [BSD] - CRI ▴ 20

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214

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 6 weeks ago by belinda.phipson ▴ 40 • written 6 weeks ago by s.malik • 0

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321

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GO limma CAMERA

updated 9 weeks ago by Gordon Smyth 50k • written 9 weeks ago by Tyler Sagendorf ▴ 10

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332

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GO EnrichmentBrowser

updated 11 weeks ago by James W. MacDonald 65k • written 11 weeks ago by prity6459 • 0

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521

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GO ensembldb

5 months ago Rockbar • 0

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397

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go DESeq2

updated 6 months ago by James W. MacDonald 65k • written 6 months ago by Alvin • 0

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598

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GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 10 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

8 results • Page 1 of 1

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Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you Michael for your attention to my question. I am truly grateful. I subsetted the data using lines of codes to include only the g…

Comment: [DiffBind] Obtaining normalization factors by Henry ▴ 10

I see, thank you for your suggestion! I managed to use a separate RLE normalization to obtain the size factors.

Answer: Memory errors using read.bismark? by Peter Hickey ▴ 690

Thanks for sharing an example file. This is a very large non-CpG methylation dataset, which are tricky to work with for a number of reason…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

Superficially, your issue is similar to [https://github.com/hansenlab/bsseq/issues/136](https://github.com/hansenlab/bsseq/issues/136). You…

Answer: Reading huge bismark coverage files using bbseq::read.bismark by Peter Hickey ▴ 690

I'm one of the **bsseq** developers. Are you able to share one of your files with me (e.g., via Dropbox, Google Drive, OneDrive, etc.). Tha…

Votes

Comment: [DiffBind] Obtaining normalization factors

Answer: ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with var

Comment: Not fully paired differential gene expression analysis

Answer: GSVA error

Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA

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