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3.7k

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clusterProfiler GO GO enrichment genesetenrichment

updated 5 weeks ago by jandrade • 0 • written 6.4 years ago by Huang, Lei [BSD] - CRI ▴ 20

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235

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DNAMethylation GO MethylationArray missMethyl EPICv2

updated 7 weeks ago by belinda.phipson ▴ 40 • written 7 weeks ago by s.malik • 0

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332

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GO limma CAMERA

updated 10 weeks ago by Gordon Smyth 50k • written 10 weeks ago by Tyler Sagendorf ▴ 10

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4.9k

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clusterProfiler AnnotationHub GO uniprot

updated 11 weeks ago by Guido Hooiveld ★ 3.9k • written 3.2 years ago by Alberto • 0

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358

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GO EnrichmentBrowser

updated 12 weeks ago by James W. MacDonald 65k • written 12 weeks ago by prity6459 • 0

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540

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GO ensembldb

6 months ago Rockbar • 0

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411

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go DESeq2

updated 7 months ago by James W. MacDonald 65k • written 7 months ago by Alvin • 0

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606

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GO biomaRt

updated 9 months ago by James W. MacDonald 65k • written 9 months ago by cstorer • 0

8 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by shuwangxinze1996 • 0

Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

This comment helps.

Comment: DESeq2 output used for PCA plot on R studio by Kevin Blighe ★ 3.9k

I am not sure how your comment helps here?

Votes

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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Supporter to JKim • 0