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FW: Gene list annotation
Annotation GO annotate limma GOstats topGO Annotation GO annotate limma GOstats topGO
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 10
0
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1
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1.2k
views
Gene list annotation
Annotation GO annotate Annotation GO annotate
updated 13.4 years ago by 21k • written 13.4 years ago by ★ 13k
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3.1k
views
qrqc with error message of "unable to start device PNG" and "unable to open connection to X11 display"?
GO qrqc ASSIGN GO qrqc ASSIGN
13.5 years ago Sang Chul Choi ▴ 230
0
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898
views
how to load RangedData for all chromosomes in one tab in UCSC browser using browserView from rtracklayer
GO Cancer rtracklayer GO Cancer rtracklayer
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 370
0
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3
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1.9k
views
topGO dependency: Rgrapphviz
GO Rgraphviz topGO GO Rgraphviz topGO
updated 13.5 years ago by ★ 8.2k • written 13.5 years ago by ▴ 20
0
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views
biomart error returning data
GO biomaRt GO biomaRt
13.5 years ago Guest User ★ 13k
0
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4
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4.0k
views
voom() vs. RPKM/FPKM or otherwise normalized counts, and GC correction, when fitting models to a small number of responses (per-feature counts)
Normalization GO graph Rsubread Normalization GO graph Rsubread
updated 13.5 years ago by 53k • written 13.5 years ago by ★ 4.2k
0
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3
replies
2.8k
views
FastqStreamer
GO GO
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 390
0
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1
reply
1.9k
views
Useful information about Ensembl release 67 mart databases
miRNA GO Caenorhabditis elegans Sus scrofa zebrafish PolyPhen SIFT miRNA GO Sus scrofa
13.5 years ago Thomas Maurel ▴ 800
0
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1.7k
views
design and contrast matrix for limma time series without replicates
Microarray GO Regression limma Microarray GO Regression limma
13.5 years ago Chunxuan Shao ▴ 30
0
votes
1
reply
719
views
GO analysis using chromosomal ranges
GO GO
updated 13.5 years ago by 25k • written 13.5 years ago by ▴ 130
0
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0
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974
views
Help with adSplit package
Microarray GO Clustering adSplit Microarray GO Clustering adSplit
13.5 years ago Luz Mayela Soto ▴ 10
0
votes
1
reply
829
views
GO analysis for CNVs
GO GO
updated 13.5 years ago by ★ 4.3k • written 13.5 years ago by ▴ 130
0
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3
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2.2k
views
How can I remove control probesets from the expressionset object in gene expression analysis with Affy Human Gene 1.0ST microarray
Microarray Annotation Normalization GO probe genefilter affy limma oligo Microarray GO
updated 13.5 years ago by ▴ 190 • written 13.5 years ago by 68k
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2
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1.3k
views
FW: miRNA annotation
miRNA Annotation GO Cancer miRNA Annotation GO Cancer
updated 13.5 years ago by 68k • written 13.5 years ago by ▴ 70
0
votes
1
reply
891
views
BSgenomes and protein sequences: protein names
GO GO
updated 13.5 years ago by ★ 6.8k • written 13.5 years ago by ▴ 30
0
votes
1
reply
2.9k
views
Motif search -- access to JASPAR, MotIV package, , more TF-PWM relationships?
Annotation GO MotIV Annotation GO MotIV
updated 13.6 years ago by ▴ 10 • written 13.6 years ago by ▴ 160
0
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0
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1.4k
views
Fwd: RCytoscape couldn't connect to host
GO GLAD RCytoscape GO GLAD RCytoscape
13.6 years ago Paul Shannon ▴ 750
0
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3
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1.7k
views
GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 120
0
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1
reply
1.9k
views
GOseq for enrichment of clustering results
GO Clustering goseq GO Clustering goseq
updated 13.6 years ago by ▴ 100 • written 13.6 years ago by ▴ 110
0
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1
reply
1.7k
views
geneLenDataBase installation issues
GO rtracklayer goseq BiocInstaller GO rtracklayer goseq BiocInstaller
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 50
0
votes
8
replies
1.8k
views
Affy data analysis
Pathways GO affy Pathways GO affy
updated 13.6 years ago by 68k • written 13.6 years ago by ▴ 180
0
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2
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1.3k
views
Affymetrix data
Normalization Pathways GO annotate Normalization Pathways GO annotate
updated 13.6 years ago by ▴ 200 • written 13.6 years ago by ▴ 180
0
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0
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1.2k
views
question about getGOList in GeneAnswers
GO GeneAnswers GO GeneAnswers
13.6 years ago Zhi Zhang ▴ 70
0
votes
3
replies
3.3k
views
Read .idat Illumina files in R
GO GO
updated 13.6 years ago by ▴ 50 • written 13.6 years ago by ▴ 370
0
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0
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1.2k
views
changing directory in RStudio and Bioconductor AMI and Amazon EC2
GO GO
13.6 years ago Dan Tenenbaum ★ 8.2k
0
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0
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1.3k
views
Rgraphviz and node label placement
GO graph GO graph
13.6 years ago Paul Murrell ▴ 60
0
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0
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1.6k
views
cummeRbund error
GO cummeRbund GO cummeRbund
13.6 years ago Bruce MoranExternal ▴ 50
0
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2
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2.2k
views
Tktable 2.9 makefile problem
GO affylmGUI GO affylmGUI
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 10
0
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2
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1.3k
views
ChIPpeakAnno: Inquiry for Worm Analysis
Annotation GO annotate convert ChIPpeakAnno Annotation GO annotate convert ChIPpeakAnno
13.7 years ago • updated 13.6 years ago Julie Zhu ★ 4.3k
0
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0
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1.2k
views
Rgraphviz and node label placement
GO graph GO graph
13.6 years ago Iain Gallagher ▴ 930
0
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3
replies
1.7k
views
Rsamtools installation
GO Rsamtools GO Rsamtools
updated 13.6 years ago by 25k • written 13.6 years ago by ▴ 40
0
votes
2
replies
1.1k
views
DESeq estimateDispersion options for lower depth
Genetics GO Genetics GO
13.6 years ago Aggarwal, Praful ▴ 50
0
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0
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2.2k
views
DESeq for two-factor models
GO DESeq GO DESeq
13.6 years ago Henning Wildhagen ▴ 30
0
votes
2
replies
1.3k
views
curious IRanges error when sort()ing a GRanges
GO BSgenome BSgenome GenomicRanges GO BSgenome BSgenome GenomicRanges
updated 13.6 years ago by 16k • written 13.6 years ago by ★ 4.2k
0
votes
1
reply
4.0k
views
problems generating a gene2GOlist in topGO
Genetics Annotation GO hgu95av2 convert biomaRt topGO Genetics Annotation GO hgu95av2
updated 13.6 years ago by ▴ 400 • written 13.7 years ago by ▴ 510
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4
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1.7k
views
eset from GEOqury pkg
GO GO
updated 13.7 years ago by 21k • written 13.7 years ago by ▴ 380
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0
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1.3k
views
GAGE heatmap pdf question...
GO gage GO gage
13.7 years ago Luo Weijun ★ 1.6k
0
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0
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1.5k
views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings Category BSgenome rtracklayer GO
13.7 years ago Matthew Young ▴ 50
0
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1
reply
1.2k
views
ChIPpeakAnno on pathway enrichment
Pathways GO ChIPpeakAnno Pathways GO ChIPpeakAnno
updated 13.7 years ago by ▴ 240 • written 13.7 years ago by ★ 4.3k
0
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0
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914
views
ChIPpeakAnno: makeVennDiagram and sampling peaks
GO GO
13.7 years ago Julie Zhu ★ 4.3k
0
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2
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1.0k
views
New to Bioconductor is there a better way?
SNP GO SNP GO
updated 13.7 years ago by ★ 6.5k • written 13.7 years ago by ▴ 40
0
votes
6
replies
4.7k
views
batch effect confounded with condition
GO limma GO limma
13.7 years ago Tefina Paloma ▴ 220
0
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0
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786
views
Need immediate help please-BeadSummaryData
GO beadarray GO beadarray
13.7 years ago Cute Guy ▴ 10
0
votes
0
replies
1.2k
views
makeOrgPackageFromNCBI another error - reversed commands
BiocViews GO Organism ChipName biocViews BiocViews BiocViews GO Organism ChipName
13.7 years ago Guest User ★ 13k
0
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1
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948
views
Problem with Bimap objects
GO mgug4122a probe GO mgug4122a probe
updated 13.7 years ago by ★ 1.1k • written 13.7 years ago by ▴ 30
0
votes
1
reply
1.2k
views
AnnotationDbi - makeOrgPackageFromNCBI - gene_info table is not populated
GO GO
updated 13.7 years ago by ★ 7.2k • written 13.7 years ago by ★ 13k
0
votes
3
replies
1.8k
views
homopolymer gap extension penalty in Biostrings
Sequencing Alignment GO Cancer Sequencing Alignment GO Cancer
updated 13.7 years ago by ▴ 10 • written 13.7 years ago by 16k
0
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2
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1.2k
views
fastest way to get a gene list having certain GO term
GO GO
13.7 years ago Duke ▴ 210
0
votes
4
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2.6k
views
ChIPpeakAnno as.data.frame error
GO AnnotationData annotate convert ChIPpeakAnno GO AnnotationData annotate convert
updated 13.7 years ago by ★ 4.3k • written 13.7 years ago by ▴ 910
1,936 results • Page 13 of 39
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Comment: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif by Matthew Thornton ▴ 380
WOW! Thank you so much for the information. I will do this.
Comment: "Watched Tags" are being erased rather than updated by RalphSavage99 • 0
Thanks for sharing https://github.com/Bioconductor/support.bioconductor.org/issues/112
Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
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Answer: What R/Bioconductor tools would you recommend for the analysis of sncRNA, specif
Using edgeR or DESeq2 to analyze allele-specific expression?
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
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