Showing : goTools • reset
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how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.1 years ago by ★ 7.2k
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
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2
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1.8k
views
goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 11.8 years ago by 65k • written 11.8 years ago by ★ 13k
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9
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1.8k
views
ontoCompare (goTools) : goidvect error
GO goTools GO goTools
12.7 years ago Oana VIGY ▴ 80
0
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2
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1.9k
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help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 13.5 years ago by ▴ 550 • written 13.5 years ago by ▴ 100
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847
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goTools question
probe goTools probe goTools
13.6 years ago Pete Shepard ▴ 240
0
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0
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964
views
obtaining GOID from nuID
GO goTools lumi GO goTools lumi
14.3 years ago Md.Mamunur Rashid ▴ 260
0
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1
reply
1000
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 50
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740
views
question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
14.7 years ago Oana VIGY ▴ 80
0
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1
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1.2k
views
(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 14.8 years ago by ▴ 270 • written 14.8 years ago by ▴ 300
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1
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1.1k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.8 years ago by ▴ 60 • written 14.9 years ago by ▴ 50
0
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4
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1.4k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 160
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2
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1.2k
views
using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 15.4 years ago by ▴ 90 • written 15.4 years ago by ▴ 830
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0
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773
views
goTools package - extract genes
GO probe goTools GO probe goTools
15.9 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
0
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1
reply
883
views
Reporting results of HyperGTest
GO goTools GO goTools
updated 16.0 years ago by ▴ 20 • written 16.0 years ago by ▴ 320
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1
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1.0k
views
Arabidopsis GO Pie Charts
goTools Category goTools Category
16.5 years ago Naomi Altman ★ 6.0k
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4
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2.1k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ★ 1.4k
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3
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1.3k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 80
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views
Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.0 years ago Paquet, Agnes ▴ 500
0
votes
0
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912
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
17.2 years ago Paquet, Agnes ▴ 500
0
votes
1
reply
862
views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 40
0
votes
1
reply
851
views
Using ontoCompare with local GO database
GO goTools GO goTools
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 100
0
votes
1
reply
1.0k
views
goTools problem
goTools oligo goTools oligo
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 30
0
votes
1
reply
1.2k
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 17.7 years ago by ▴ 870 • written 17.7 years ago by ▴ 340
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12
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2.0k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.1 years ago michael watson IAH-C ★ 3.4k
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2
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1.0k
views
GO Tools
GO goTools GO goTools
19.0 years ago Paquet, Agnes ▴ 500
0
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0
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877
views
GO Tools
goTools goTools
19.0 years ago Mayte Suarez-Farinas ▴ 300
0
votes
1
reply
885
views
annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 300
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2
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1.1k
views
goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
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1
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1.3k
views
GOtools: argument is of length zero
goTools goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
30 results • Page 1 of 1
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Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Robert Castelo ★ 3.2k
Hi, your `c2` object storing all the gene sets is probably a `list` object, where element names are the names of the pathways given by MSig…
Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
I tried the default normalization and got similar results as above. Perhaps I need to try identifying the difference peak without using dif…
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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Scholar to Robert Castelo ★ 3.2k
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