Showing : goTools • reset
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
20 months ago Madza Farias-Virgens • 0
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2
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goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 10.1 years ago by 60k • written 10.1 years ago by ★ 12k
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how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 6 weeks ago by • 0 • written 10.5 years ago by ★ 7.2k
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9
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1.2k
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ontoCompare (goTools) : goidvect error
GO goTools GO goTools
11.0 years ago Oana VIGY ▴ 80
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2
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1.5k
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help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 11.9 years ago by ▴ 550 • written 11.9 years ago by ▴ 100
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goTools question
probe goTools probe goTools
11.9 years ago Pete Shepard ▴ 240
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751
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obtaining GOID from nuID
GO goTools lumi GO goTools lumi
12.6 years ago Md.Mamunur Rashid ▴ 260
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1
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707
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 12.8 years ago by ★ 7.4k • written 12.8 years ago by ▴ 50
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question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
13.1 years ago Oana VIGY ▴ 80
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1
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758
views
(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 13.1 years ago by ▴ 270 • written 13.1 years ago by ▴ 300
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742
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question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 13.2 years ago by ▴ 60 • written 13.2 years ago by ▴ 50
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4
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954
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 13.6 years ago by ▴ 90 • written 13.6 years ago by ▴ 160
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2
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760
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using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 13.8 years ago by ▴ 90 • written 13.8 years ago by ▴ 830
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goTools package - extract genes
GO probe goTools GO probe goTools
14.2 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
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1
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603
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Reporting results of HyperGTest
GO goTools GO goTools
updated 14.4 years ago by ▴ 20 • written 14.4 years ago by ▴ 320
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1
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662
views
Arabidopsis GO Pie Charts
goTools Category goTools Category
14.8 years ago Naomi Altman ★ 6.0k
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4
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1.6k
views
disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 14.9 years ago by ▴ 500 • written 14.9 years ago by ★ 1.4k
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3
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845
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GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 15.1 years ago by ★ 7.4k • written 15.1 years ago by ▴ 80
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Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
15.3 years ago Paquet, Agnes ▴ 500
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question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
15.5 years ago Paquet, Agnes ▴ 500
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1
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631
views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 15.6 years ago by 60k • written 15.6 years ago by ▴ 40
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1
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619
views
Using ontoCompare with local GO database
GO goTools GO goTools
updated 15.6 years ago by ▴ 500 • written 15.6 years ago by ▴ 100
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1
reply
715
views
goTools problem
goTools oligo goTools oligo
updated 15.6 years ago by ▴ 500 • written 15.6 years ago by ▴ 30
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1
reply
911
views
GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 16.0 years ago by ▴ 870 • written 16.0 years ago by ▴ 340
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12
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1.3k
views
Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
16.5 years ago michael watson IAH-C ★ 3.4k
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2
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698
views
GO Tools
GO goTools GO goTools
17.3 years ago Paquet, Agnes ▴ 500
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0
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605
views
GO Tools
goTools goTools
17.3 years ago Mayte Suarez-Farinas ▴ 300
0
votes
1
reply
612
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annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 17.5 years ago by ★ 2.9k • written 17.5 years ago by ▴ 300
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2
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852
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goTools and plot and go group names
GO graph goTools GO graph goTools
updated 18.0 years ago by ▴ 500 • written 18.0 years ago by ▴ 320
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1
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1.1k
views
GOtools: argument is of length zero
goTools goTools
updated 18.0 years ago by ▴ 500 • written 18.0 years ago by ▴ 320
30 results • Page 1 of 1
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Comment: IsoformSwitchAnalyzeR package on mouse data by bpshtiwan ▴ 10
Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best
Comment: Design and contrast matrices for analyzing the effect of two factors of interest by Gordon Smyth 46k
I understand that your mock dataset has expression data for just one protein instead of 8000, but is the phenoData complete? Does your real…
Comment: error running UniProt.ws by James W. MacDonald 60k
Or maybe it is a quick fix! Nicely done Marcel!
Answer: Error with TCGA package - TCGAbiolinks by Tiago C. Silva ▴ 220
It is working with the github version. Could you update please? BiocManager::install("BioinformaticsFMRP/TCGAbiolinksGUI.data") …
Comment: Error with TCGA package - TCGAbiolinks by Marcel Ramos 570
You can try the Genomic Data Commons Data Portal at [https://portal.gdc.cancer.gov/][1] or the `GenomicDataCommons` R/Bioconductor packag…
Votes
A: Importance of Order in Design Formula
remove microarray batch effects using Limma
On empirical Bayes of edgeR
Answer: CQN to DESeq2
Comment: package 'BiocInstaller' is not available (for R version 3.4.4)
Awards • All
Centurion to Marcel Ramos 570
Scholar to Gordon Smyth 46k
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