Bioconductor GoTools

Showing : goTools • reset

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Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes

updated 22 months ago by pengmin.wang.1 • 0 • written 12.2 years ago by Marc Carlson ★ 7.2k

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GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO

updated 16.6 years ago by Steffen ▴ 500 • written 16.6 years ago by Dick Beyer ★ 1.4k

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Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats

18.2 years ago michael watson IAH-C ★ 3.4k

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goTools sigPathway topGO goTools sigPathway topGO

updated 13.6 years ago by Michael Dondrup ▴ 550 • written 13.6 years ago by Veerendra GP ▴ 100

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1.8k

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GO goTools GO goTools

12.7 years ago Oana VIGY ▴ 80

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1.8k

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Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO

updated 11.8 years ago by James W. MacDonald 65k • written 11.8 years ago by Guest User ★ 13k

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1.4k

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GO hgu133a graph goTools GO hgu133a graph goTools

updated 15.3 years ago by Alex Sanchez ▴ 90 • written 15.3 years ago by Wolfgang Raffelsberger ▴ 160

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1.3k

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goTools goTools

updated 19.7 years ago by Paquet, Agnes ▴ 500 • written 19.7 years ago by Dr Gyorffy Balazs ▴ 320

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GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt

updated 16.8 years ago by Seth Falcon ★ 7.4k • written 16.8 years ago by Lina Hultin-Rosenberg ▴ 80

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1.2k

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GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm

updated 15.5 years ago by Dykema, Karl ▴ 90 • written 15.5 years ago by Mark W Kimpel ▴ 830

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1.2k

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Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools

updated 17.7 years ago by Nianhua Li ▴ 870 • written 17.7 years ago by Ann Hess ▴ 340

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1.2k

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Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats

updated 14.8 years ago by anupam sinha ▴ 270 • written 14.8 years ago by McGee, Monnie ▴ 300

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GO graph goTools GO graph goTools

updated 19.7 years ago by Paquet, Agnes ▴ 500 • written 19.7 years ago by Dr Gyorffy Balazs ▴ 320

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1.1k

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Transcription GO hgu133a goTools Transcription GO hgu133a goTools

updated 14.9 years ago by Jean-Pierre Desvignes ▴ 60 • written 14.9 years ago by Scott Markel ▴ 50

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goTools oligo goTools oligo

updated 17.3 years ago by Paquet, Agnes ▴ 500 • written 17.3 years ago by Jorrit Boekel ▴ 30

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Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo

17.0 years ago Paquet, Agnes ▴ 500

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GO goTools GO goTools

19.0 years ago Paquet, Agnes ▴ 500

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1.0k

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goTools Category goTools Category

16.5 years ago Naomi Altman ★ 6.0k

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1.0k

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Transcription GO hgu133a goTools Transcription GO hgu133a goTools

updated 14.5 years ago by Seth Falcon ★ 7.4k • written 14.5 years ago by Scott Markel ▴ 50

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GO goTools lumi GO goTools lumi

14.3 years ago Md.Mamunur Rashid ▴ 260

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915

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GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo

17.2 years ago Paquet, Agnes ▴ 500

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886

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Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools

updated 19.2 years ago by John Zhang ★ 2.9k • written 19.2 years ago by Straubhaar, Juerg ▴ 300

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884

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GO goTools GO goTools

updated 16.0 years ago by Pankaj Chopra ▴ 20 • written 16.0 years ago by Paolo Innocenti ▴ 320

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878

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goTools goTools

19.0 years ago Mayte Suarez-Farinas ▴ 300

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863

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GO goTools GOstats goCluster GO goTools GOstats goCluster

updated 17.3 years ago by James W. MacDonald 65k • written 17.3 years ago by Caroline Reiff ▴ 40

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854

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GO goTools GO goTools

updated 17.3 years ago by Paquet, Agnes ▴ 500 • written 17.3 years ago by Alessandro Bruselles ▴ 100

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848

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probe goTools probe goTools

13.6 years ago Pete Shepard ▴ 240

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774

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GO probe goTools GO probe goTools

15.9 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10

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750

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DOSE hypeR goTools GOstats topGO

3.4 years ago Madza Farias-Virgens • 0

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740

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GO PROcess goTools GO PROcess goTools

14.7 years ago Oana VIGY ▴ 80

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GO.db goTools

3 hours ago • updated 2 hours ago bandconductor • 0

31 results • Page 1 of 1

Recent ...

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Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Comment: minfi::read.metharray.exp by clacarion • 0

Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

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