Showing : goTools • reset
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how to get gene list for given GO terms?
Pathways GO Cancer PROcess goTools genomes Pathways GO Cancer PROcess goTools genomes
updated 22 months ago by • 0 • written 12.2 years ago by ★ 7.2k
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4
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disagreement between biomaRt and topGO
GO hgu133plus2 annotate geneplotter graph Rgraphviz PROcess goTools biomaRt Category GO
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ★ 1.4k
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12
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Quick start to linking GO terms and microarray data
Microarray GO affy PROcess goTools GOstats Microarray GO affy PROcess goTools GOstats
18.2 years ago michael watson IAH-C ★ 3.4k
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help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 13.6 years ago by ▴ 550 • written 13.6 years ago by ▴ 100
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9
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1.8k
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ontoCompare (goTools) : goidvect error
GO goTools GO goTools
12.7 years ago Oana VIGY ▴ 80
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goTools: Error in goidvect[test] : invalid subscript type \'list\'
Transcription Microarray Annotation GO goTools Transcription Microarray Annotation GO
updated 11.8 years ago by 65k • written 11.8 years ago by ★ 13k
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4
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1.4k
views
error with ontoCompare (goTools)
GO hgu133a graph goTools GO hgu133a graph goTools
updated 15.3 years ago by ▴ 90 • written 15.3 years ago by ▴ 160
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1.3k
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GOtools: argument is of length zero
goTools goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
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3
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1.3k
views
GO terms not found in goTools and GO
GO Biobase annotate goTools biomaRt GO Biobase annotate goTools biomaRt
updated 16.8 years ago by ★ 7.4k • written 16.8 years ago by ▴ 80
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2
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1.2k
views
using GSEAlm with GO geneSetCollections
GO affy goTools Category GSEABase GSEAlm GO affy goTools Category GSEABase GSEAlm
updated 15.5 years ago by ▴ 90 • written 15.5 years ago by ▴ 830
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1
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1.2k
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GO annotation/analysis for ath1121501
Annotation GO ath1121501 goTools GOstats biomaRt Annotation GO ath1121501 goTools
updated 17.7 years ago by ▴ 870 • written 17.7 years ago by ▴ 340
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(no subject)
Pathways Clustering goTools GOstats Pathways Clustering goTools GOstats
updated 14.8 years ago by ▴ 270 • written 14.8 years ago by ▴ 300
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1.1k
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goTools and plot and go group names
GO graph goTools GO graph goTools
updated 19.7 years ago by ▴ 500 • written 19.7 years ago by ▴ 320
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1
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1.1k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.9 years ago by ▴ 60 • written 14.9 years ago by ▴ 50
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1.0k
views
goTools problem
goTools oligo goTools oligo
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 30
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0
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1.0k
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Problem with customised endnode list in ontoCompare(goToolspackage)
Microarray GO graph goTools Category oligo Microarray GO graph goTools Category oligo
17.0 years ago Paquet, Agnes ▴ 500
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2
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1.0k
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GO Tools
GO goTools GO goTools
19.0 years ago Paquet, Agnes ▴ 500
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1
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1.0k
views
Arabidopsis GO Pie Charts
goTools Category goTools Category
16.5 years ago Naomi Altman ★ 6.0k
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1
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1.0k
views
question about ontoCompare() performance change
Transcription GO hgu133a goTools Transcription GO hgu133a goTools
updated 14.5 years ago by ★ 7.4k • written 14.5 years ago by ▴ 50
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965
views
obtaining GOID from nuID
GO goTools lumi GO goTools lumi
14.3 years ago Md.Mamunur Rashid ▴ 260
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0
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915
views
question about the value retured by function ontoCompare()
GO hgu133a probe PROcess goTools oligo GO hgu133a probe PROcess goTools oligo
17.2 years ago Paquet, Agnes ▴ 500
0
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1
reply
887
views
annotation packages and goTools
Annotation moe430a moe430b goTools Annotation moe430a moe430b goTools
updated 19.2 years ago by ★ 2.9k • written 19.2 years ago by ▴ 300
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884
views
Reporting results of HyperGTest
GO goTools GO goTools
updated 16.1 years ago by ▴ 20 • written 16.1 years ago by ▴ 320
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0
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878
views
GO Tools
goTools goTools
19.0 years ago Mayte Suarez-Farinas ▴ 300
0
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1
reply
863
views
problems with library goCluster
GO goTools GOstats goCluster GO goTools GOstats goCluster
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 40
0
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1
reply
856
views
Using ontoCompare with local GO database
GO goTools GO goTools
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ▴ 100
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0
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848
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goTools question
probe goTools probe goTools
13.6 years ago Pete Shepard ▴ 240
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774
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goTools package - extract genes
GO probe goTools GO probe goTools
15.9 years ago Anne Dirks Højfeldt / Region Nordjylland ▴ 10
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750
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Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
3.4 years ago Madza Farias-Virgens • 0
0
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0
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740
views
question about ontoCompare() performance change
GO PROcess goTools GO PROcess goTools
14.8 years ago Oana VIGY ▴ 80
2
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3
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93
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 18 hours ago by 65k • written 1 day ago by • 0
31 results • Page 1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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