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Showing :
goana
•
reset
0
votes
0
replies
1.2k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
10 months ago
Raito92
▴ 60
15
votes
18
replies
1.2k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 10 months ago by
Gordon Smyth
47k • written 10 months ago by
Raito92
▴ 60
1
vote
2
replies
460
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
17 months ago
Barista
• 0
5
votes
7
replies
981
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 2.8 years ago by
Gordon Smyth
47k • written 2.8 years ago by
Raito92
▴ 60
0
votes
3
replies
716
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 3.4 years ago by
Gordon Smyth
47k • written 3.4 years ago by
Ahdee
▴ 50
6
votes
10
replies
3.6k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 12 months ago by
Gordon Smyth
47k • written 3.5 years ago by
matrs
▴ 10
3
votes
4
replies
928
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
b.nota
▴ 360
0
votes
3
replies
1.9k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 5.0 years ago by
Gordon Smyth
47k • written 5.0 years ago by
jfreixas
• 0
0
votes
4
replies
2.4k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
5.2 years ago
emy_66
• 0
3
votes
2
replies
3.7k
views
No genes found in universe : goana error
edger
goana
gene ontology
5.3 years ago
fawazfebin
▴ 50
0
votes
2
replies
951
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 5.6 years ago by
Gordon Smyth
47k • written 5.7 years ago by
Jenny Drnevich
★ 2.0k
3
votes
6
replies
1.7k
views
Strange output from goana()
edger
goana
updated 6.0 years ago by
Gordon Smyth
47k • written 6.0 years ago by
cronanz
• 0
0
votes
4
replies
1.4k
views
need help with microarray GO enrichment using goana
goana
limma
updated 6.2 years ago by
Gordon Smyth
47k • written 6.2 years ago by
mat149
▴ 70
4
votes
3
replies
960
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 6.4 years ago by
James W. MacDonald
62k • written 6.4 years ago by
jhj89
▴ 10
13
votes
6
replies
5.4k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 7.6 years ago by
Gordon Smyth
47k • written 7.6 years ago by
carl.mann
▴ 20
15 results • Page
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Replies
Comment: How to load fasta file with openPrimeR?
by
Santiago Edilberto
• 0
> library(openPrimeR) There are missing/non-functioning external tools. To use the full potential of openPrimeR, please mak…
Answer: Which input file is used for DGEList in EgdeR?
by
Gordon Smyth
47k
I use and recommend featureCounts. Despite all that has been written on this topic, I still think that direct gene counting is faster and m…
Comment: How to load fasta file with openPrimeR?
by
mdoering
▴ 10
A FASTA file is a raw text file (not MS Word or the likes), with a specific structure, along the likes of: > \>seq_id_1 \ > ACAGCACA \ > \…
Comment: How to load fasta file with openPrimeR?
by
Santiago Edilberto
• 0
How do I know if my file is properly formatted FASTA file?
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
by
Hervé Pagès
16k
Got it. Yeah I guess having a `strandMode` parameter for `readGAlignmentsList()` would help handle this. @Robert: Do you want to open an i…
Votes
Answer: Is this DESeq2 interactions design correct?
Comment: STRINGdb string_db$map error
Comment: How to normalize long-read RNA-seq data for comparison with short-reads
Answer: Library sizes of miRNA sequencing data and TMM normalization with Edge-R
C: Can't install TopmedPipeline Package
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Gordon Smyth
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Martin Morgan
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