Biostar Goana

Showing : goana • reset

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1.1k

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goana RNASeq edgeR RnaSeq GO

10 months ago Raito92 ▴ 60

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1.2k

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DESeq2 edgeR goana GO

updated 10 months ago by Gordon Smyth 47k • written 10 months ago by Raito92 ▴ 60

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451

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EdgeR Bioinformatics Goana

17 months ago Barista • 0

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967

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go de enrichment rnaseq goana

updated 2.8 years ago by Gordon Smyth 47k • written 2.8 years ago by Raito92 ▴ 60

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708

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limma goana kegga

updated 3.4 years ago by Gordon Smyth 47k • written 3.4 years ago by Ahdee ▴ 50

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3.6k

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goana edger

updated 12 months ago by Gordon Smyth 47k • written 3.5 years ago by matrs ▴ 10

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918

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limma goana edger

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by b.nota ▴ 360

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1.8k

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edger goana kegga

updated 5.0 years ago by Gordon Smyth 47k • written 5.0 years ago by jfreixas • 0

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2.4k

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limma goana gene set enrichment

5.2 years ago emy_66 • 0

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3.7k

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edger goana gene ontology

5.3 years ago • updated 5.2 years ago fawazfebin ▴ 50

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946

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limma missMethyl gometh goana kegga

updated 5.6 years ago by Gordon Smyth 47k • written 5.7 years ago by Jenny Drnevich ★ 2.0k

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1.7k

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edger goana

updated 5.9 years ago by Gordon Smyth 47k • written 5.9 years ago by cronanz • 0

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1.4k

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goana limma

updated 6.2 years ago by Gordon Smyth 47k • written 6.2 years ago by mat149 ▴ 70

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952

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edger goana

updated 6.4 years ago by James W. MacDonald 62k • written 6.4 years ago by jhj89 ▴ 10

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5.4k

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limma goana

updated 7.6 years ago by Gordon Smyth 47k • written 7.6 years ago by carl.mann ▴ 20

15 results • Page 1 of 1

Recent ...

Replies

Comment: Sva and batch effect by Gordon Smyth 47k

(+1). I find that ComBat tends to introduce spurious differential expression so, you think there's a batch effect affecting the variances a…

Comment: Advice for the analysis of microarray data with limma by Gordon Smyth 47k

You mean references on orthogonal polynomials? Polynomial approximation is a classic topic in mathematics and statistics and there are many…

Comment: Limma-voom with inverse probability weights (similar to sample weights) by Gordon Smyth 47k

The potential problem isn't with empirical Bayes with the fact that the variance estimate from your method A linear model might not be mean…

Answer: Sva and batch effect by James W. MacDonald 62k

You shouldn't be computing regular t-statistics to begin with. In addition, `sva` is intended to adjust for *unobserved variability*, and a…

Answer: Micro Array GEO data analysis by James W. MacDonald 62k

You could try getting the RCC files and normalizing yourself, using `getGEOSuppFiles` and the `NanoStringNorm` package. Or just use NanoStr…

Votes

Answer: Sva and batch effect

Answer: AnnotationForge::makeOrgPackage "argument is missing, with no default" Errors

Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE

Answer: Limma-voom with inverse probability weights

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