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goana
•
reset
15
votes
18
replies
3.3k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
6
votes
10
replies
5.1k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 2.2 years ago by
Gordon Smyth
50k • written 4.8 years ago by
matrs
▴ 10
13
votes
6
replies
6.2k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
carl.mann
▴ 20
3
votes
6
replies
2.3k
views
Strange output from goana()
edger
goana
updated 7.2 years ago by
Gordon Smyth
50k • written 7.2 years ago by
cronanz
• 0
0
votes
2
replies
1.4k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 6.8 years ago by
Gordon Smyth
50k • written 6.9 years ago by
Jenny Drnevich
★ 2.0k
3
votes
2
replies
4.6k
views
No genes found in universe : goana error
edger
goana
gene ontology
6.5 years ago
fawazfebin
▴ 60
0
votes
4
replies
3.1k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
6.4 years ago
emy_66
• 0
0
votes
3
replies
2.4k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
jfreixas
• 0
0
votes
3
replies
1.2k
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
Ahdee
▴ 50
5
votes
7
replies
2.2k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
Raito92
▴ 60
1
vote
2
replies
946
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
2.7 years ago
Barista
• 0
0
votes
3
replies
399
views
Agilent Microarray Gene Oncology analysis gone wrong
AgilentChip
limma
goana
updated 4 months ago by
SamGG
▴ 350 • written 4 months ago by
samagbeyimodupe
• 0
4
votes
3
replies
1.3k
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
jhj89
▴ 10
0
votes
4
replies
1.9k
views
need help with microarray GO enrichment using goana
goana
limma
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
mat149
▴ 70
3
votes
4
replies
1.3k
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
b.nota
▴ 360
0
votes
0
replies
2.9k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
2.1 years ago
Raito92
▴ 60
16 results • Page
1 of 1
Recent ...
Replies
Comment: How to retrieve gene ontology GO class?
by
bandconductor
• 0
Sorry I wasn't clear before. What I mean is the all the information associated with the go term, such as description and evidence. I have …
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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