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Showing :
goana
•
reset
15
votes
18
replies
3.3k
views
Is goana function for Gene Ontology enrichement analysis suitable for both edgeR and DESeq2 DEGs lists?
DESeq2
edgeR
goana
GO
updated 2.1 years ago by
Gordon Smyth
50k • written 2.1 years ago by
Raito92
▴ 60
13
votes
6
replies
6.2k
views
goana limma- extract list of DE genes and genes in the enriched GO terms?
limma
goana
updated 8.8 years ago by
Gordon Smyth
50k • written 8.8 years ago by
carl.mann
▴ 20
6
votes
10
replies
5.1k
views
goana and "No annotated genes found in universe" even with Entrez gene ids
goana
edger
updated 2.2 years ago by
Gordon Smyth
50k • written 4.7 years ago by
matrs
▴ 10
5
votes
7
replies
2.2k
views
Alternative tools to perform GO enrichment on DE genes
go
de
enrichment
rnaseq
goana
updated 4.0 years ago by
Gordon Smyth
50k • written 4.0 years ago by
Raito92
▴ 60
4
votes
3
replies
1.3k
views
including information indicating upregulation/downregulation of genes in goana()
edger
goana
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
jhj89
▴ 10
3
votes
6
replies
2.3k
views
Strange output from goana()
edger
goana
updated 7.2 years ago by
Gordon Smyth
50k • written 7.2 years ago by
cronanz
• 0
3
votes
2
replies
4.6k
views
No genes found in universe : goana error
edger
goana
gene ontology
6.5 years ago
fawazfebin
▴ 60
3
votes
4
replies
1.3k
views
Cannot retrieve DE genes from goana GO terms
limma
goana
edger
updated 5.8 years ago by
Aaron Lun
★ 28k • written 5.8 years ago by
b.nota
▴ 360
1
vote
2
replies
940
views
Results Goana after edgeR pipeline
EdgeR
Bioinformatics
Goana
2.7 years ago • updated 2.6 years ago
Barista
• 0
0
votes
3
replies
390
views
Agilent Microarray Gene Oncology analysis gone wrong
AgilentChip
limma
goana
updated 4 months ago by
SamGG
▴ 350 • written 4 months ago by
samagbeyimodupe
• 0
0
votes
4
replies
1.8k
views
need help with microarray GO enrichment using goana
goana
limma
updated 7.4 years ago by
Gordon Smyth
50k • written 7.4 years ago by
mat149
▴ 70
0
votes
2
replies
1.4k
views
prior.prob has opposite effects in goana and kegga?
limma
missMethyl
gometh
goana
kegga
updated 6.8 years ago by
Gordon Smyth
50k • written 6.9 years ago by
Jenny Drnevich
★ 2.0k
0
votes
4
replies
3.1k
views
No annotated genes found in universe error using goana and kegga
limma
goana
gene set enrichment
6.4 years ago
emy_66
• 0
0
votes
3
replies
2.4k
views
Using kegga and goana for Plants
edger
goana
kegga
updated 6.2 years ago by
Gordon Smyth
50k • written 6.2 years ago by
jfreixas
• 0
0
votes
3
replies
1.2k
views
UnProducible error with goana and kegga function
limma
goana
kegga
updated 4.6 years ago by
Gordon Smyth
50k • written 4.6 years ago by
Ahdee
▴ 50
0
votes
0
replies
2.9k
views
Create a Gene Enrichment GO plot from goana output
goana
RNASeq
edgeR
RnaSeq
GO
2.1 years ago
Raito92
▴ 60
16 results • Page
1 of 1
Recent ...
Replies
Answer: Cannabis and KEGGgraph
by
deeenes
▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches
by
Gordon Smyth
50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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