Biostar Goana

Showing : goana • reset

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1.4k

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DESeq2 edgeR goana GO

updated 12 months ago by Gordon Smyth 47k • written 12 months ago by Raito92 ▴ 60

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5.5k

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limma goana

updated 7.7 years ago by Gordon Smyth 47k • written 7.7 years ago by carl.mann ▴ 20

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3.7k

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goana edger

updated 14 months ago by Gordon Smyth 47k • written 3.7 years ago by matrs ▴ 10

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1.1k

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go de enrichment rnaseq goana

updated 2.9 years ago by Gordon Smyth 47k • written 2.9 years ago by Raito92 ▴ 60

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988

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edger goana

updated 6.5 years ago by James W. MacDonald 62k • written 6.5 years ago by jhj89 ▴ 10

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965

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limma goana edger

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by b.nota ▴ 360

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1.8k

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edger goana

updated 6.1 years ago by Gordon Smyth 47k • written 6.1 years ago by cronanz • 0

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3.8k

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edger goana gene ontology

5.5 years ago • updated 5.4 years ago fawazfebin ▴ 50

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506

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EdgeR Bioinformatics Goana

19 months ago Barista • 0

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2.5k

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limma goana gene set enrichment

5.4 years ago emy_66 • 0

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768

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limma goana kegga

updated 3.5 years ago by Gordon Smyth 47k • written 3.5 years ago by Ahdee ▴ 50

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1.9k

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edger goana kegga

updated 5.1 years ago by Gordon Smyth 47k • written 5.1 years ago by jfreixas • 0

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1.4k

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goana RNASeq edgeR RnaSeq GO

12 months ago Raito92 ▴ 60

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1.4k

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goana limma

updated 6.4 years ago by Gordon Smyth 47k • written 6.4 years ago by mat149 ▴ 70

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983

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limma missMethyl gometh goana kegga

updated 5.7 years ago by Gordon Smyth 47k • written 5.8 years ago by Jenny Drnevich ★ 2.0k

15 results • Page 1 of 1

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Comment: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Giulia • 0

Hi Rory, Thank you for your quick reply and advice on the matter. The following are the MAplots for the analysis using the background=TRU…

Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar by ATpoint ★ 2.4k

I asked the same some years back: https://support.bioconductor.org/p/p134551/#p134561

Comment: FlowSOM with unrelated channels by helucro ▴ 70

Could you perhaps comment one why you would want to include non-biological "unrelated" channels such as time and event length for clusterin…

Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2? by Rory Stark ★ 4.6k

It is unusual to see such a big difference between the two analysis methods, although it is more likely when you have only two replicates d…

Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g. by Rory Stark ★ 4.6k

You need to call `dba.normalize()` twice, first to establish the normalization calculations, and the second time to retrieve them: cou…

Votes

Comment: FlowSOM with unrelated channels

Answer: DESeq2 lfcShrink: swapping reference gives different results for the same compar

Answer: Can I run DESeq2 with SMART-Seq data

Comment: RUVSeq and DESeq2 -- all variables in design formula must be columns in colData

A: Compare and filter two BAM files, one record at a time

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Teacher to Michael Love 39k