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goexpress
•
reset
6
votes
7
replies
3.7k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.5 years ago
martin.hoelzer
▴ 20
2
votes
6
replies
2.6k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.1 years ago by
kevin.rue
▴ 350 • written 8.1 years ago by
martin.hoelzer
▴ 20
9
votes
8
replies
3.8k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.1 years ago
Bogdan
▴ 670
2
votes
8
replies
1.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 18 months ago by
kevin.rue
▴ 350 • written 18 months ago by
grolo
• 0
3
votes
6
replies
1.8k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.5 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
kcamnairb
▴ 10
5
votes
4
replies
1.6k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.3 years ago by
kevin.rue
▴ 350 • written 7.3 years ago by
mforde84
▴ 20
2
votes
4
replies
1.3k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.2 years ago
sina.zboron
• 0
0
votes
4
replies
1.0k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.2 years ago by
kevin.rue
▴ 350 • written 4.2 years ago by
atorson
• 0
0
votes
2
replies
984
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.6 years ago
rezashiralmohammad
• 0
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 4.5 years ago by
kevin.rue
▴ 350 • written 4.5 years ago by
Antonio Campos
• 0
3
votes
2
replies
1.3k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 8.5 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
willj
▴ 30
0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
17 months ago
Chruut
• 0
0
votes
3
replies
3.6k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 7.9 years ago by
kevin.rue
▴ 350 • written 7.9 years ago by
Darya Vanichkina
▴ 120
0
votes
0
replies
442
views
GOexpress pvalue and gene sets
GOexpress
2.2 years ago
jms2520
▴ 10
14 results • Page
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Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Votes
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
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