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goexpress
•
reset
6
votes
7
replies
4.8k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
10.3 years ago
martin.hoelzer
▴ 20
2
votes
6
replies
3.3k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 9.9 years ago by
kevin.rue
▴ 350 • written 9.9 years ago by
martin.hoelzer
▴ 20
9
votes
8
replies
5.6k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.9 years ago
Bogdan
▴ 670
2
votes
8
replies
2.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 3.2 years ago by
kevin.rue
▴ 350 • written 3.2 years ago by
grolo
• 0
3
votes
6
replies
2.4k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 10.2 years ago by
kevin.rue
▴ 350 • written 10.2 years ago by
kcamnairb
▴ 10
5
votes
4
replies
2.2k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 9.0 years ago by
kevin.rue
▴ 350 • written 9.0 years ago by
mforde84
▴ 20
2
votes
4
replies
1.9k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
8.0 years ago
sina.zboron
• 0
0
votes
4
replies
1.7k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 6.0 years ago by
kevin.rue
▴ 350 • written 6.0 years ago by
atorson
• 0
0
votes
2
replies
1.5k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
6.4 years ago
rezashiralmohammad
• 0
1
vote
2
replies
2.0k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 6.3 years ago by
kevin.rue
▴ 350 • written 6.3 years ago by
Antonio Campos
• 0
3
votes
2
replies
1.8k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 10.2 years ago by
kevin.rue
▴ 350 • written 10.2 years ago by
willj
▴ 30
0
votes
2
replies
3.4k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
3.2 years ago
Chruut
• 0
0
votes
3
replies
4.7k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 9.7 years ago by
kevin.rue
▴ 350 • written 9.7 years ago by
Darya Vanichkina
▴ 130
0
votes
0
replies
739
views
GOexpress pvalue and gene sets
GOexpress
3.9 years ago
jms2520
▴ 10
14 results • Page
1 of 1
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Comment: Quality control of shotgun metagenomics data
by
elonlilx54
• 0
If you are a fan of word guessing games like Wordle, then you definitely cannot ignore [Octordle][1] - a more challenging and attractive ex…
Answer: Incosistencies in buildSNNGraph() function
by
stephengriffin04
• 0
Thank you for shedding light on the inconsistencies in the `buildSNNGraph()` function. It's crucial for users to address these issues as th…
Answer: A problem occurs when running the monocle2
by
stephengriffin04
• 0
I totally feel you on the monocle2 issues! I had a similar run-in with unexpected errors last week that had me pulling my hair out. Did you…
Answer: limpa-blank normalization and Spectronaut's PTM stoichiometry
by
Gordon Smyth
53k
limpa reads standard feature-level output from Spectronaut. You do not need to make any changes to the output before reading it into limpa.…
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Noted, thank you very much.
Votes
Comment: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
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