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goexpress
•
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9
votes
8
replies
3.7k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.1 years ago
Bogdan
▴ 670
2
votes
8
replies
1.0k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 17 months ago by
kevin.rue
▴ 350 • written 17 months ago by
grolo
• 0
6
votes
7
replies
3.7k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.5 years ago
martin.hoelzer
▴ 20
2
votes
6
replies
2.6k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.1 years ago by
kevin.rue
▴ 350 • written 8.1 years ago by
martin.hoelzer
▴ 20
3
votes
6
replies
1.7k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.4 years ago by
kevin.rue
▴ 350 • written 8.4 years ago by
kcamnairb
▴ 10
0
votes
4
replies
1.0k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.2 years ago by
kevin.rue
▴ 350 • written 4.2 years ago by
atorson
• 0
5
votes
4
replies
1.5k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.2 years ago by
kevin.rue
▴ 350 • written 7.2 years ago by
mforde84
▴ 20
2
votes
4
replies
1.2k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.2 years ago
sina.zboron
• 0
0
votes
3
replies
3.6k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 7.9 years ago by
kevin.rue
▴ 350 • written 7.9 years ago by
Darya Vanichkina
▴ 120
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 4.5 years ago by
kevin.rue
▴ 350 • written 4.5 years ago by
Antonio Campos
• 0
0
votes
2
replies
958
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.6 years ago
rezashiralmohammad
• 0
0
votes
2
replies
1.4k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
16 months ago
Chruut
• 0
3
votes
2
replies
1.3k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 8.4 years ago by
kevin.rue
▴ 350 • written 8.4 years ago by
willj
▴ 30
0
votes
0
replies
429
views
GOexpress pvalue and gene sets
GOexpress
2.1 years ago
jms2520
▴ 10
14 results • Page
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by
Jitendra
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thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
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Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
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3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
Answer: Doing comparison of RNA-seq data using EdgeR
by
Gordon Smyth
50k
It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
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by
Gordon Smyth
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The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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