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goexpress
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0
votes
2
replies
1.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
17 months ago
Chruut
• 0
2
votes
8
replies
1.1k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 18 months ago by
kevin.rue
▴ 350 • written 18 months ago by
grolo
• 0
0
votes
0
replies
442
views
GOexpress pvalue and gene sets
GOexpress
2.2 years ago
jms2520
▴ 10
0
votes
4
replies
1.0k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 4.2 years ago by
kevin.rue
▴ 350 • written 4.2 years ago by
atorson
• 0
1
vote
2
replies
1.2k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 4.5 years ago by
kevin.rue
▴ 350 • written 4.5 years ago by
Antonio Campos
• 0
0
votes
2
replies
984
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
4.6 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.3k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
6.2 years ago
sina.zboron
• 0
9
votes
8
replies
3.8k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
7.1 years ago
Bogdan
▴ 670
5
votes
4
replies
1.6k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 7.3 years ago by
kevin.rue
▴ 350 • written 7.3 years ago by
mforde84
▴ 20
0
votes
3
replies
3.6k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 7.9 years ago by
kevin.rue
▴ 350 • written 7.9 years ago by
Darya Vanichkina
▴ 120
2
votes
6
replies
2.6k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.1 years ago by
kevin.rue
▴ 350 • written 8.1 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.3k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 8.5 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
willj
▴ 30
3
votes
6
replies
1.8k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 8.5 years ago by
kevin.rue
▴ 350 • written 8.5 years ago by
kcamnairb
▴ 10
6
votes
7
replies
3.7k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
8.5 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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