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goexpress
•
reset
0
votes
2
replies
2.5k
views
Can't install GO.db
GOexpress
GO.db
GOSemSim
2.2 years ago
Chruut
• 0
2
votes
8
replies
1.5k
views
Errors when plotting data using heatmap_GO (GOexpress)
GOexpress
updated 2.3 years ago by
kevin.rue
▴ 350 • written 2.3 years ago by
grolo
• 0
0
votes
0
replies
583
views
GOexpress pvalue and gene sets
GOexpress
3.0 years ago
jms2520
▴ 10
0
votes
4
replies
1.3k
views
GOexpress - Error when plotting expression data
RNA-seq
transcriptomics
gene ontology
gene expression
GOexpress
updated 5.0 years ago by
kevin.rue
▴ 350 • written 5.0 years ago by
atorson
• 0
1
vote
2
replies
1.6k
views
Obtain the first gene expression heatmaps from GOexpress package gene ontology enrichment analysis results
GOexpress
heatmap
gene ontology
plot
updated 5.3 years ago by
kevin.rue
▴ 350 • written 5.3 years ago by
Antonio Campos
• 0
0
votes
2
replies
1.2k
views
'GO_analyse' function error
goexpress
ExpressionSet
GO_analyse
5.4 years ago
rezashiralmohammad
• 0
2
votes
4
replies
1.5k
views
GOexpress - Trouble with subset_scores result (<0 rows>)
GOexpress
subset_scores
<0 rows>
7.1 years ago
sina.zboron
• 0
9
votes
8
replies
4.6k
views
heatmap of genes based on enriched GO categories
goexpress
gopro
8.0 years ago • updated 7.9 years ago
Bogdan
▴ 670
5
votes
4
replies
1.9k
views
Contrasts in GOexpress analysis?
gene ontology
goexpress
updated 8.1 years ago by
kevin.rue
▴ 350 • written 8.1 years ago by
mforde84
▴ 20
0
votes
3
replies
4.2k
views
Gene ontology and pathway analysis in R - replicate ToppGene features; best strategy for getting annotations?
topgo
biomart
gene ontology
goexpress
pathway analysis
updated 8.7 years ago by
kevin.rue
▴ 350 • written 8.7 years ago by
Darya Vanichkina
▴ 130
2
votes
6
replies
2.9k
views
GOexpress: GO_analyse function throws Error: Space required after the Public Identifier
goexpress
updated 8.9 years ago by
kevin.rue
▴ 350 • written 8.9 years ago by
martin.hoelzer
▴ 20
3
votes
2
replies
1.6k
views
Is it common to get all 0 values when running the randomForest step in GOexpress?
goexpress
updated 9.3 years ago by
kevin.rue
▴ 350 • written 9.3 years ago by
willj
▴ 30
3
votes
6
replies
2.1k
views
GOexpress error at pValue_GO step
software error
goexpress
updated 9.3 years ago by
kevin.rue
▴ 350 • written 9.3 years ago by
kcamnairb
▴ 10
6
votes
7
replies
4.2k
views
GOexpress: use DESeq2 data object as input
GOexpress
deseq2
expressionset
9.3 years ago
martin.hoelzer
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Comment: GSVA on RNAseq data
by
Robert Castelo
★ 3.4k
Hi Bob, I have not investigated whether a particular unit of expression works better than others, but using logTPM or logCPM units of expr…
Answer: Store Matrix in DataFrame Cell
by
James W. MacDonald
68k
Put it in a list and put the list in a column.
Comment: For some reason I can't update BiocManager to 3.20
by
James W. MacDonald
68k
Please post output from starting R and then running `sessionInfo()` (as requested by the web form you use to post questions). I get ``` > …
Comment: p-value the same for different contrasts DESeq2
by
caroline.zanchi
• 0
It would be great if it were possible to do something similar using GlmGamPoi !
Comment: Web accessibility of Bioconductor.org
by
Sean Davis
21k
Added issue to website github repo: https://github.com/Bioconductor/bioconductor.org/issues/304
Votes
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
Answer: Standardization of rlog transformed counts before PCA
A: Rtracklayer fails to export TxDb as GFF3 without CDS
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