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goprofiles
•
reset
0
votes
1
reply
675
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 18 months ago by
Basti
▴ 780 • written 18 months ago by
yeluo
• 0
3
votes
9
replies
2.9k
views
Create object "Go3AnnDbBimap" and include it in a org.Xx.eg.db package to use with goProfiles and goTools
goprofiles
AnnotationForge
Bimap
GO
9.6 years ago
artur
▴ 80
0
votes
0
replies
1.6k
views
Ontology lack in goProfiles : no BP or CC just MF
GO
goProfiles
GO
goProfiles
10.0 years ago
Arnaud Mounier
▴ 40
0
votes
0
replies
1.2k
views
error while using goProfiles package on arabidopsis entrez gene IDs
GO
Organism
goProfiles
GO
Organism
goProfiles
10.7 years ago
Marc Carlson
★ 7.2k
0
votes
0
replies
1.7k
views
error while using goProfiles package on arabidopsis entrez gene IDs
goProfiles
goProfiles
10.7 years ago
Guest User
★ 13k
0
votes
2
replies
1.1k
views
Gene Ontologies exploration
goProfiles
GeneAnswers
goProfiles
GeneAnswers
updated 11.2 years ago by
Marc Carlson
★ 7.2k • written 11.2 years ago by
Jose M Garcia Manteiga
▴ 310
0
votes
2
replies
1.0k
views
Profiles
GO
goProfiles
GO
goProfiles
updated 11.5 years ago by
Steve Lianoglou
★ 13k • written 11.5 years ago by
Guest User
★ 13k
0
votes
2
replies
1.4k
views
How to make my own GO.db?
GO
goProfiles
GO
goProfiles
updated 13.8 years ago by
Marc Carlson
★ 7.2k • written 13.8 years ago by
Xiaohui Wu
▴ 280
0
votes
1
reply
1.2k
views
How to cluster genes based on their GO term in Arabidopsis?
GO
Cancer
Prostate
goProfiles
GO
Cancer
Prostate
goProfiles
updated 13.8 years ago by
James W. MacDonald
65k • written 13.8 years ago by
Xiaohui Wu
▴ 280
0
votes
0
replies
776
views
Problem about using "goProfiles"
Category
goProfiles
Category
goProfiles
13.9 years ago
wei tie
▴ 30
0
votes
0
replies
1.0k
views
How to compare GO results
Annotation
GO
topGO
goProfiles
Annotation
GO
topGO
goProfiles
14.6 years ago
Johannes Hanson
▴ 30
0
votes
0
replies
894
views
plotProfiles (goProfiles) and bitmap
GO
graph
goProfiles
GO
graph
goProfiles
14.8 years ago
Jean-Pierre Desvignes
▴ 60
0
votes
8
replies
1.8k
views
PreProcess and Limma 'done'. What directions now?
goProfiles
goProfiles
updated 14.9 years ago by
Steve Lianoglou
★ 13k • written 14.9 years ago by
Massimo Pinto
▴ 390
0
votes
2
replies
1.1k
views
namespace error with goProfiles package
GO
mouse4302
goProfiles
GO
mouse4302
goProfiles
updated 15.9 years ago by
Alex Sanchez
▴ 20 • written 15.9 years ago by
Straubhaar, Juerg
▴ 300
14 results • Page
1 of 1
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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