Bioconductor Goprofiles

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goprofiles AnnotationForge Bimap GO

9.6 years ago artur ▴ 80

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goProfiles goProfiles

updated 14.9 years ago by Steve Lianoglou ★ 13k • written 14.9 years ago by Massimo Pinto ▴ 390

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GO mouse4302 goProfiles GO mouse4302 goProfiles

updated 15.9 years ago by Alex Sanchez ▴ 20 • written 15.9 years ago by Straubhaar, Juerg ▴ 300

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GO goProfiles GO goProfiles

updated 13.8 years ago by Marc Carlson ★ 7.2k • written 13.8 years ago by Xiaohui Wu ▴ 280

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GO goProfiles GO goProfiles

updated 11.5 years ago by Steve Lianoglou ★ 13k • written 11.5 years ago by Guest User ★ 13k

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goProfiles GeneAnswers goProfiles GeneAnswers

updated 11.2 years ago by Marc Carlson ★ 7.2k • written 11.2 years ago by Jose M Garcia Manteiga ▴ 310

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GO.db GOfuncR GO GOSim goProfiles

updated 18 months ago by Basti ▴ 770 • written 18 months ago by yeluo • 0

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GO Cancer Prostate goProfiles GO Cancer Prostate goProfiles

updated 13.8 years ago by James W. MacDonald 65k • written 13.8 years ago by Xiaohui Wu ▴ 280

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GO goProfiles GO goProfiles

10.0 years ago Arnaud Mounier ▴ 40

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GO Organism goProfiles GO Organism goProfiles

10.7 years ago Marc Carlson ★ 7.2k

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Annotation GO topGO goProfiles Annotation GO topGO goProfiles

14.6 years ago Johannes Hanson ▴ 30

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Category goProfiles Category goProfiles

13.9 years ago wei tie ▴ 30

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goProfiles goProfiles

10.7 years ago Guest User ★ 13k

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GO graph goProfiles GO graph goProfiles

14.8 years ago Jean-Pierre Desvignes ▴ 60

14 results • Page 1 of 1

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Answer: Log-cpm values from limma by Gordon Smyth 50k

The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0

Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…

Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k

I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …

Comment: Theoretical WGCNA Question by Garrett • 0

Thanks Peter!

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Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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