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gosim
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0
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2
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2.3k
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GOSim yeast
GO
Yeast
GOSim
GO
Yeast
GOSim
updated 7.9 years ago by
solis
• 0 • written 12.7 years ago by
Guest User
★ 13k
0
votes
3
replies
1.4k
views
Query Gene Ontology
GOSim
GOSim
updated 13.8 years ago by
Wolfgang Huber
★ 13k • written 13.8 years ago by
LEMAITRE Hervé Université Paris Sud
▴ 10
0
votes
2
replies
1.5k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
updated 13.5 years ago by
Olivier Lucas
▴ 40 • written 13.5 years ago by
Marc Carlson
★ 7.2k
0
votes
1
reply
1.6k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim
gosemsim
updated 7.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 9.4 years ago by
s.apocarpum
▴ 10
3
votes
3
replies
1.0k
views
compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 6.3 years ago by
Lluís Revilla Sancho
▴ 760 • written 6.3 years ago by
monifass
▴ 10
0
votes
1
reply
1.4k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 15.4 years ago by
Marc Carlson
★ 7.2k • written 15.4 years ago by
Gang Chen
▴ 20
1
vote
1
reply
923
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim
GOSemSim
updated 2.0 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.0 years ago by
eliska.ochodkova
▴ 10
0
votes
0
replies
1.4k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
13.5 years ago
Olivier Lucas
▴ 40
0
votes
0
replies
949
views
Problem while working with GOSim package
GOSim
GOSim
12.5 years ago
ANIRBAN BHAR
▴ 60
0
votes
0
replies
1.1k
views
GOSim Problem
Yeast
Organism
GOSim
Yeast
Organism
GOSim
12.4 years ago
Pablo Andretta Jaskowiak
▴ 10
0
votes
1
reply
920
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 2.4 years ago by
Basti
▴ 780 • written 2.4 years ago by
yeluo
• 0
11 results • Page
1 of 1
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Replies
Answer: Automatically install dependencies
by
ATpoint
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The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
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