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gosim
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0
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2
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2.0k
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GOSim yeast
GO
Yeast
GOSim
GO
Yeast
GOSim
updated 7.1 years ago by
solis
• 0 • written 11.9 years ago by
Guest User
★ 13k
0
votes
3
replies
1.2k
views
Query Gene Ontology
GOSim
GOSim
updated 12.9 years ago by
Wolfgang Huber
★ 13k • written 12.9 years ago by
LEMAITRE Hervé Université Paris Sud
▴ 10
0
votes
2
replies
1.3k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
updated 12.6 years ago by
Olivier Lucas
▴ 40 • written 12.7 years ago by
Marc Carlson
★ 7.2k
0
votes
1
reply
1.4k
views
Normalization of specificity level (level of depth) of GO terms dataset
gosim
gosemsim
updated 7.1 years ago by
Lluís Revilla Sancho
▴ 730 • written 8.5 years ago by
s.apocarpum
▴ 10
3
votes
3
replies
817
views
compute similarities of GOTerms with GOSim in non-human species
GOSim
updated 5.5 years ago by
Lluís Revilla Sancho
▴ 730 • written 5.5 years ago by
monifass
▴ 10
0
votes
1
reply
1.2k
views
Gene ID of yeast in GOSemSim and other GO related package may need update
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
Annotation
GO
Yeast
biomaRt
GOSemSim
GOSim
updated 14.6 years ago by
Marc Carlson
★ 7.2k • written 14.6 years ago by
Gang Chen
▴ 20
1
vote
1
reply
626
views
GoSemSim - function mgeneSim() is resulting in similarity matrix without 1s on diagonal
GOSim
GOSemSim
updated 14 months ago by
Lluís Revilla Sancho
▴ 730 • written 14 months ago by
eliska.ochodkova
▴ 10
0
votes
0
replies
1.2k
views
Simple GO pie and GOSim install error
GO
Organism
biomaRt
GOSim
GO
Organism
biomaRt
GOSim
12.7 years ago
Olivier Lucas
▴ 40
0
votes
0
replies
826
views
Problem while working with GOSim package
GOSim
GOSim
11.7 years ago
ANIRBAN BHAR
▴ 60
0
votes
0
replies
985
views
GOSim Problem
Yeast
Organism
GOSim
Yeast
Organism
GOSim
11.6 years ago
Pablo Andretta Jaskowiak
▴ 10
0
votes
1
reply
674
views
I want to convert the go enrichment result to a data frame (tidy data)with two column which one is the gene symbol and the other is go term. Any one…
GO.db
GOfuncR
GO
GOSim
goProfiles
updated 18 months ago by
Basti
▴ 780 • written 18 months ago by
yeluo
• 0
11 results • Page
1 of 1
Recent ...
Replies
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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